3ZG9
Crystal Structure of Penicillin-Binding Protein 4 from Listeria monocytogenes in the Cefuroxime bound form
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Transpeptidase_1st_1 | e3zg9B1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_1st_1 | ECOD (1.6) |
B | Transpeptidase_2nd | e3zg9B2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_2nd | ECOD (1.6) |
B | Transgly | e3zg9B3 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Transgly | ECOD (1.6) |
A | Transgly_like | e3zg9A1 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Transgly_like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
A | 6.20.370.110 | Special | Other non-globular | Rhinovirus 14, subunit 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR050396 | Glycosyltransferase 51/Transpeptidase | Family | |
IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
IPR001264 | Glycosyl transferase, family 51 | Domain | |
IPR036950 | Penicillin binding protein transglycosylase domain | Homologous Superfamily | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR050396 | Glycosyltransferase 51/Transpeptidase | Family | |
IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
IPR001264 | Glycosyl transferase, family 51 | Domain | |
IPR036950 | Penicillin binding protein transglycosylase domain | Homologous Superfamily | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain |