3ZYJ | pdb_00003zyj

NetrinG1 in complex with NGL1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e3zyjB1	A: RuvA-C	X: Hypothetical protein MTH1615	H: Hypothetical protein MTH1615	T: PsbH	F:	ECOD (20:10:01)
B		e3zyjB4	A: Fusion glycoprotein F2	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: FXa_inhibition	F:	ECOD (20:10:01)
D		e3zyjD3	A: Subtilisin-like	X: Subtilisin-like	H: Subtilisin-like	T: Peptidase_M49	F:	ECOD (20:10:01)
A		e3zyjA2	A: Alpha helical domain of ribonucleotide reductases	X: Alpha helical domain of ribonucleotide reductases	H: Alpha helical domain of ribonucleotide reductases	T: NAGidase	F:	ECOD (20:10:01)
A		e3zyjA3	A: Alpha helical domain of ribonucleotide reductases	X: Alpha helical domain of ribonucleotide reductases	H: Alpha helical domain of ribonucleotide reductases	T:	F:	ECOD (20:10:01)
C		e3zyjC2	A: Alpha helical domain of ribonucleotide reductases	X: Alpha helical domain of ribonucleotide reductases	H: Alpha helical domain of ribonucleotide reductases	T: NAGidase	F:	ECOD (20:10:01)
C		e3zyjC1	A: Alpha helical domain of ribonucleotide reductases	X: Alpha helical domain of ribonucleotide reductases	H: Alpha helical domain of ribonucleotide reductases	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)
B	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
D	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)
D	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
A	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF24973	Laminin/attractin EGF domain (EGF_LMN_ATRN)	Laminin/attractin EGF domain	This entry represents the EGF-like domains found in laminin subunits (alpha, beta, gamma), attractin (ATRN), netrin, among others. ATRN is involved in the initial immune cell clustering during inflammatory response and may regulate chemotactic activi ...	This entry represents the EGF-like domains found in laminin subunits (alpha, beta, gamma), attractin (ATRN), netrin, among others. ATRN is involved in the initial immune cell clustering during inflammatory response and may regulate chemotactic activity of chemokines. It may play a role in melanocortin signaling pathways that regulate energy homeostasis and hair color [1]. It was thought to have dipeptidase activity but it was shown later to lack that activity [2]. Laminins are crucial for the formation of stable basement membranes and organising receptor complexes and cytoskeletal components. Netrins control guidance of central nervous system commissural axons and peripheral motor axons, serving as survival factors and regulating apoptosis.	Domain
B, D	PF00055	Laminin N-terminal (Domain VI) (Laminin_N)	Laminin N-terminal (Domain VI)		Domain
A, C	PF13855	Leucine rich repeat (LRR_8)	Leucine rich repeat	-	Repeat
A, C	PF07679	Immunoglobulin I-set domain (I-set)	Immunoglobulin I-set domain		Domain
A, C	PF00560	Leucine Rich Repeat (LRR_1)	Leucine Rich Repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	NETRIN-G1	cell adhesion molecule binding protein binding binding cell adhesion mediator activity cell-cell adhesion mediator activity	trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process cellular component organization cell adhesion cell junction organization cell-cell adhesion synaptic membrane adhesion synapse organization cellular component organization or biogenesis multicellular organismal process regulation of cellular component organization regulation of developmental process cellular developmental process regulation of neuron projection arborization cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis regulation of cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development regulation of anatomical structure morphogenesis system development developmental process plasma membrane bounded cell projection organization regulation of cell projection organization nervous system development generation of neurons anatomical structure morphogenesis neuron projection arborization neuron development regulation of neuron projection development regulation of plasma membrane bounded cell projection organization regulation of cell motility neuron migration regulation of neuron migration regulation of locomotion regulation of cell migration cell migration cell motility locomotion axonogenesis axon development cell morphogenesis involved in neuron differentiation	cellular anatomical structure membrane side of membrane extracellular region Schaffer collateral - CA1 synapse synapse cell junction cell periphery plasma membrane glutamatergic synapse presynaptic active zone membrane presynaptic membrane synaptic membrane presynapse cellular anatomical structure membrane side of membrane extracellular region Schaffer collateral - CA1 synapse synapse cell junction cell periphery plasma membrane glutamatergic synapse presynaptic active zone membrane presynaptic membrane synaptic membrane presynapse plasma membrane region presynaptic active zone
A, C	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4C	cell adhesion molecule binding protein binding binding cell adhesion mediator activity cell-cell adhesion mediator activity	trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process regulation of neuron projection development multicellular organismal process axonogenesis regulation of cellular component organization cellular developmental process regulation of developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis regulation of axonogenesis cell differentiation anatomical structure development cellular component organization or biogenesis regulation of anatomical structure morphogenesis system development developmental process plasma membrane bounded cell projection organization regulation of cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development regulation of plasma membrane bounded cell projection organization cell adhesion cell junction organization cell-cell adhesion synaptic membrane adhesion synapse organization	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region Schaffer collateral - CA1 synapse extracellular region extracellular space glutamatergic synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR008211	Laminin, N-terminal	Domain
B, D	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
B, D	IPR050440	Laminin/Netrin Extracellular Matrix	Family
B, D	IPR002049	Laminin-type EGF domain	Domain
B, D	IPR000742	EGF-like domain	Domain
A, C	IPR000372	Leucine-rich repeat N-terminal domain	Domain
A, C	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, C	IPR003598	Immunoglobulin subtype 2	Domain
A, C	IPR001611	Leucine-rich repeat	Repeat
A, C	IPR050541	Leucine-rich repeat and transmembrane domain-containing protein	Family
A, C	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, C	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C	IPR013106	Immunoglobulin V-set domain	Domain
A, C	IPR003599	Immunoglobulin domain subtype	Domain
A, C	IPR007110	Immunoglobulin-like domain	Domain
A, C	IPR013098	Immunoglobulin I-set	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D	Pharos: Q9Y2I2	bipolar disorder atypical Rett syndrome colorectal cancer schizophrenia non-small cell lung carcinoma pilocytic astrocytoma astrocytic tumor Colorectal Neoplasms glioblastoma large cell medulloblastoma malignant ependymoma oligodendroglioma pituitary cancer cystic fibrosis intellectual disability bipolar disorder atypical Rett syndrome colorectal cancer schizophrenia non-small cell lung carcinoma pilocytic astrocytoma astrocytic tumor Colorectal Neoplasms glioblastoma large cell medulloblastoma malignant ependymoma oligodendroglioma pituitary cancer cystic fibrosis intellectual disability lung adenocarcinoma malignant glioma medulloblastoma ovarian cancer atypical teratoid rhabdoid tumor colorectal carcinoma interstitial cystitis lung carcinoma
A, C	Pharos: Q9HCJ2	attention deficit hyperactivity disorder, inattentive type large cell medulloblastoma medulloblastoma psoriasis atypical teratoid rhabdoid tumor malignant ependymoma oligodendroglioma glioblastoma malignant glioma pilocytic astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.