4C00 | pdb_00004c00

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	POTRA domain-like	8046696	4006413	SCOP2 (2022-06-29)
A	SCOP2 Family	Outer-membrane protein Omp85-like	8048569	4006144	SCOP2 (2022-06-29)
A	SCOP2 Family	POTRA domain-like	8049236	4006413	SCOP2 (2022-06-29)
A	SCOP2 Family	POTRA domain-like	8052257	4006413	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	POTRA domain-like	8052259	3002100	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Porins	8052258	3000224	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	POTRA domain-like	8052261	3002100	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	POTRA domain-like	8052260	3002100	SCOP2 (2022-06-29)

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e4c00A2	A: Fusion glycoprotein F2	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: SH3_1	F:	ECOD (20:10:01)
A		e4c00A3	A: YrdC/RibB	X: YrdC/RibB	H: YrdC/RibB	T: Sua5_yciO_yrdC	F:	ECOD (20:10:01)

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.310	Alpha Beta	Roll	Ubiquitin-like (UB roll)	membrane protein fhac	CATH (4.3.0)
A	2.40.160.50	Mainly Beta	Beta Barrel	Porin	membrane protein fhac: a member of the omp85/tpsb transporter family	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07244	Surface antigen variable number repeat (POTRA)	Surface antigen variable number repeat	This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members ...	This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.	Domain
A	PF17243	POTRA domain TamA domain 1 (POTRA_TamA_1)	POTRA domain TamA domain 1	This family represents the POTRA domain found in the membrane insertase TamA.	Domain
A	PF01103	Omp85 superfamily domain (Omp85)	Omp85 superfamily domain	The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA fro ...	The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.	Domain

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	TRANSLOCATION AND ASSEMBLY MODULE TAMA	-	localization protein localization to cell periphery cellular localization macromolecule localization protein localization to outer membrane cellular process intracellular protein localization localization within membrane protein localization to membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell localization protein localization to cell periphery cellular localization macromolecule localization protein localization to outer membrane cellular process intracellular protein localization localization within membrane protein localization to membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region secretion by cell protein transport	protein-containing complex TAM protein secretion complex cell periphery cellular anatomical structure plasma membrane membrane cell outer membrane external encapsulating structure cell envelope outer membrane

Chains	Accession	Name	Type
A	IPR039910	Surface antigen D15-like	Family
A	IPR035243	TamA, POTRA domain 1	Domain
A	IPR034746	POTRA domain	Domain
A	IPR000184	Bacterial surface antigen (D15)	Domain
A	IPR010827	POTRA domain, BamA/TamA-like	Domain

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Beta-barrel transmembrane	Omp85-TpsB transporters (n=16,S=20,22)	OMP insertion (Bam complex) porin (n=16,S=22)

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Outer Membrane Autotransporters	TamA Autotransporter, full length

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 4C00 | pdb_00004c00