4D1F | pdb_00004d1f

Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, first P212121 crystal form

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Peptidase_M99_C	e4d1fH1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
K	Peptidase_M99_C	e4d1fK1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
L	Peptidase_M99_C	e4d1fL1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
J	Peptidase_M99_C	e4d1fJ1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
I	Peptidase_M99_C	e4d1fI1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
G	Peptidase_M99_C	e4d1fG1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
F	Peptidase_M99_C	e4d1fF1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
E	Peptidase_M99_C	e4d1fE1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
D	Peptidase_M99_C	e4d1fD1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
C	Peptidase_M99_C	e4d1fC1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
B	Peptidase_M99_C	e4d1fB1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)
A	Peptidase_M99_C	e4d1fA1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF22183	Atadenovirus fibre, head domain (Fibre_HD)	Atadenovirus fibre, head domain	This entry represents the carboxy-terminal virus-distal fibre head domain present in Atadenovirus. This domain is putatively responsible for primary receptor recognition. Atadenovirus fibre head domains has a similar beta-sandwich propeller topology ...	This entry represents the carboxy-terminal virus-distal fibre head domain present in Atadenovirus. This domain is putatively responsible for primary receptor recognition. Atadenovirus fibre head domains has a similar beta-sandwich propeller topology found in other adenovirus fibre proteins (PDB:4d0u) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	FIBER PROTEIN	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction cell adhesion cellular process symbiont entry into host cell symbiont entry into host	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009013	Attachment protein shaft domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR054026	Atadenovirus fibre, head domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000931	Adenovirus fibre protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.