4DAL | pdb_00004dal

Crystal structure of Putative aldehyde dehydrogenase from Sinorhizobium meliloti 1021

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4dala_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
B	d4dalb1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
B	d4dalb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
C	d4dalc1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
C	d4dalc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
D	d4dald1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
D	d4dald2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
E	d4dale1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
E	d4dale2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
F	d4dalf1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
F	d4dalf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
G	d4dalg1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
G	d4dalg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
H	d4dalh1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
H	d4dalh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	ALDH-like	8065615	4000806	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ALDH-like	8065616	3001479	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	ALDH-like	8065616	3001479	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ALDH-like	8065616	3001479	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ALDH-like	8065616	3001479	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ALDH-like	8065616	3001479	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ALDH-like	8065616	3001479	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ALDH-like	8065616	3001479	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ALDH-like	8065616	3001479	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Aldedh	e4dalA1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
B	Aldedh	e4dalB1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
C	Aldedh	e4dalC1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
D	Aldedh	e4dalD1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
E	Aldedh	e4dalE1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
F	Aldedh	e4dalF1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
G	Aldedh	e4dalG1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
H	Aldedh	e4dalH1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
A	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
B	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
B	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
C	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
C	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
D	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
D	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
E	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
E	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
F	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
F	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
G	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
G	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
H	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
H	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00171	Aldehyde dehydrogenase family (Aldedh)	Aldehyde dehydrogenase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Putative aldehyde dehydrogenase	oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity aldehyde dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015657	Aminobutyraldehyde dehydrogenase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015590	Aldehyde dehydrogenase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016161	Aldehyde/histidinol dehydrogenase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR029510	Aldehyde dehydrogenase, glutamic acid active site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016162	Aldehyde dehydrogenase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016163	Aldehyde dehydrogenase, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.