4JNU | pdb_00004jnu

Crystal structure of the human Nup57CCS3* coiled-coil segment, space group P21


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APeptidase_S8e4jnuA1 A: alpha bundlesX: ResistinH: ResistinT: ResistinF: Peptidase_S8ECOD (develop294)
BPDH_E1_Me4jnuB1 A: alpha bundlesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: PDH_E1_MECOD (develop294)
CPDH_E1_Me4jnuC1 A: alpha bundlesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: PDH_E1_MECOD (develop294)
DPDH_E1_Me4jnuD1 A: alpha bundlesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: PDH_E1_MECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF18437Nup54 C-terminal interacting domain (Nup54_C)Nup54 C-terminal interacting domainThe mammalian nuclear pore complex (NPC) conducts nucleocytoplasmic transport and contains multiple copies of nucleoporins (nups). This is the C-terminal interacting domain found on Nup54. Nup45 is a splice variant of Nup58 with an identical alpha-he ...The mammalian nuclear pore complex (NPC) conducts nucleocytoplasmic transport and contains multiple copies of nucleoporins (nups). This is the C-terminal interacting domain found on Nup54. Nup45 is a splice variant of Nup58 with an identical alpha-helical region. Nup54 along with Nup62 and Nup58 are essential for nuclear transport. The C-terminal part of the alpha-helical region of Nup54 interacts with a C-terminal part of the alpha-helical region of Nup58. Interestingly, this region appears in two distinct conformations: a single helix and a helix-loop-helix, termed 'straight' and 'bent'. Whereas the straight conformer consists of a 34 residues long alpha helix (residues 460-493), the bent conformer is composed of two alpha helices, each 13 residues long, connected by a central loop (N helix, residues 460-472; C helix, residues 477-489) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Nucleoporin p54

Pharos: Disease Associations Pharos Homepage Annotation