4JO9 | pdb_00004jo9

Crystal structure of the human Nup49CCS2+3* Nup57CCS3* complex 1:2 stoichiometry


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyNup58-like 8053256 3002169 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BEF-hand_1, EF-hand_7e4jo9B1 A: alpha bundlesX: P-loop domains-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: EF-hand_1, EF-hand_7ECOD (develop294)
CPDH_E1_Me4jo9C1 A: alpha bundlesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: PDH_E1_MECOD (develop294)
APDH_E1_Me4jo9A1 A: alpha bundlesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: PDH_E1_MECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B6.10.140.1350 Special Helix non-globular Helix Hairpins CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF18437Nup54 C-terminal interacting domain (Nup54_C)Nup54 C-terminal interacting domainThe mammalian nuclear pore complex (NPC) conducts nucleocytoplasmic transport and contains multiple copies of nucleoporins (nups). This is the C-terminal interacting domain found on Nup54. Nup45 is a splice variant of Nup58 with an identical alpha-he ...The mammalian nuclear pore complex (NPC) conducts nucleocytoplasmic transport and contains multiple copies of nucleoporins (nups). This is the C-terminal interacting domain found on Nup54. Nup45 is a splice variant of Nup58 with an identical alpha-helical region. Nup54 along with Nup62 and Nup58 are essential for nuclear transport. The C-terminal part of the alpha-helical region of Nup54 interacts with a C-terminal part of the alpha-helical region of Nup58. Interestingly, this region appears in two distinct conformations: a single helix and a helix-loop-helix, termed 'straight' and 'bent'. Whereas the straight conformer consists of a 34 residues long alpha helix (residues 460-493), the bent conformer is composed of two alpha helices, each 13 residues long, connected by a central loop (N helix, residues 460-472; C helix, residues 477-489) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Nucleoporin p58/p45
A, C
Nucleoporin p54