Crystal structure of a substrate-free glutamate transporter homologue from Thermococcus kodakarensis
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d4ky0b_ | Membrane and cell surface proteins and peptides | Proton glutamate symport protein | Proton glutamate symport protein | Proton glutamate symport protein | automated matches | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
| C | d4ky0c1 | Membrane and cell surface proteins and peptides | Proton glutamate symport protein | Proton glutamate symport protein | Proton glutamate symport protein | automated matches | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
| C | d4ky0c2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
| A | d4ky0a_ | Membrane and cell surface proteins and peptides | Proton glutamate symport protein | Proton glutamate symport protein | Proton glutamate symport protein | automated matches | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Proton glutamate symport protein | 8065925 | 3001772 | SCOP2B (2022-06-29) |
| C | SCOP2 Family | Proton glutamate symport protein | 8065924 | 4003905 | SCOP2 (2022-06-29) |
| C | SCOP2 Superfamily | Proton glutamate symport protein | 8065925 | 3001772 | SCOP2 (2022-06-29) |
| A | SCOP2B Superfamily | Proton glutamate symport protein | 8065925 | 3001772 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | e4ky0B1 | A: P-loop domains-like | X: P-loop domains-related | H: P-loop containing nucleoside triphosphate hydrolases | T: Peptidase_C30 | F: | ECOD (20:10:01) | |
| C | e4ky0C1 | A: P-loop domains-like | X: P-loop domains-related | H: P-loop containing nucleoside triphosphate hydrolases | T: Peptidase_C30 | F: | ECOD (20:10:01) | |
| A | e4ky0A1 | A: P-loop domains-like | X: P-loop domains-related | H: P-loop containing nucleoside triphosphate hydrolases | T: Peptidase_C30 | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 1.10.3860.10 | Mainly Alpha | Orthogonal Bundle | Proton glutamate symport protein | Sodium:dicarboxylate symporter | CATH (4.3.0) |
| C | 1.10.3860.10 | Mainly Alpha | Orthogonal Bundle | Proton glutamate symport protein | Sodium:dicarboxylate symporter | CATH (4.3.0) |
| A | 1.10.3860.10 | Mainly Alpha | Orthogonal Bundle | Proton glutamate symport protein | Sodium:dicarboxylate symporter | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00375 | Sodium:dicarboxylate symporter family (SDF) | Sodium:dicarboxylate symporter family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Proton/glutamate symporter, SDF family |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001991 | Sodium:dicarboxylate symporter | Family | |
| IPR036458 | Sodium:dicarboxylate symporter superfamily | Homologous Superfamily | |
| IPR018107 | Sodium:dicarboxylate symporter, conserved site | Conserved Site |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Amino Acid Secondary Transporters | Aspartate Transporter, substrate-free |
