4MCO | pdb_00004mco

Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), target EFI-510211, with bound malonate

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4mcoa1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like TRAP dicarboxylate transporter (Rhodoferax ferrireducens T118 ) [TaxId: 338969 ], SCOPe (2.08)
Ad4mcoa2 Artifacts Tags Tags Tags C-terminal Tags (Rhodoferax ferrireducens T118 ) [TaxId: 338969 ], SCOPe (2.08)
Cd4mcoc1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like TRAP dicarboxylate transporter (Rhodoferax ferrireducens T118 ) [TaxId: 338969 ], SCOPe (2.08)
Cd4mcoc2 Artifacts Tags Tags Tags C-terminal Tags (Rhodoferax ferrireducens T118 ) [TaxId: 338969 ], SCOPe (2.08)
Bd4mcob1 Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like TRAP dicarboxylate transporter (Rhodoferax ferrireducens T118 ) [TaxId: 338969 ], SCOPe (2.08)
Bd4mcob2 Artifacts Tags Tags Tags C-terminal Tags (Rhodoferax ferrireducens T118 ) [TaxId: 338969 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae4mcoA1 A: Four-helical up-and-down bundleX: Glycosyl hydrolase domainH: Glycosyl hydrolase domainT:F:ECOD (20:10:01)
Ce4mcoC1 A: Four-helical up-and-down bundleX: Glycosyl hydrolase domainH: Glycosyl hydrolase domainT: LysR_substrateF:ECOD (20:10:01)
Be4mcoB1 A: Four-helical up-and-down bundleX: Glycosyl hydrolase domainH: Glycosyl hydrolase domainT:F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.190.170 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
C3.40.190.170 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
B3.40.190.170 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF03480Bacterial extracellular solute-binding protein, family 7 (DctP)Bacterial extracellular solute-binding protein, family 7- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
TRAP dicarboxylate transporter-DctP subunit-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR018389TRAP transporter solute receptor DctPFamily
A, B, C
IPR038404TRAP transporter solute receptor DctP superfamilyHomologous Superfamily