4MSV | pdb_00004msv

Crystal structure of FASL and DcR3 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth A]	d4msva_	All beta proteins	TNF-like	TNF-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2 Family	TNF-like	8064722	4000294	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	TNF-like	8064723	3000061	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]		e4msvA1	A: CCHHC domain	X: CCHHC domain	H: CCHHC domain	T: PG_binding_1	F:	ECOD (20:10:01)
A [auth B]		e4msvB5	A: Subtilisin-like	X: Subtilisin-like	H: Subtilisin-like	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A [auth B]	2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A]	PF00229	TNF(Tumour Necrosis Factor) family (TNF)	TNF(Tumour Necrosis Factor) family		Domain
A [auth B]	PF00020	TNFR/NGFR cysteine-rich region (TNFR_c6)	TNFR/NGFR cysteine-rich region		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A]	Tumor necrosis factor ligand superfamily member 6	protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity cytokine receptor binding tumor necrosis factor receptor superfamily binding death receptor binding tumor necrosis factor receptor binding	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction cellular process positive regulation of signaling inorganic ion homeostasis homeostatic process intracellular monoatomic anion homeostasis intracellular chloride ion homeostasis monoatomic anion homeostasis cellular homeostasis chemical homeostasis monoatomic ion homeostasis intracellular chemical homeostasis chloride ion homeostasis intracellular monoatomic ion homeostasis lymphocyte apoptotic process leukocyte apoptotic process T cell apoptotic process apoptotic process cell death programmed cell death positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process cell-cell signaling intracellular pH reduction regulation of intracellular pH vesicle organization cellular component organization organelle organization intracellular monoatomic cation homeostasis regulation of pH endosome organization cellular component organization or biogenesis regulation of biological quality endosomal lumen acidification monoatomic cation homeostasis endomembrane system organization regulation of cellular pH cell surface receptor signaling pathway extrinsic apoptotic signaling pathway apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of extrinsic apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway regulation of apoptotic signaling pathway cell surface receptor protein tyrosine kinase signaling pathway positive regulation of ERBB signaling pathway regulation of epidermal growth factor receptor signaling pathway epidermal growth factor receptor signaling pathway enzyme-linked receptor protein signaling pathway positive regulation of epidermal growth factor receptor signaling pathway regulation of ERBB signaling pathway ERBB signaling pathway necroptotic process programmed necrotic cell death necroptotic signaling pathway extrinsic apoptotic signaling pathway via death domain receptors cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation release of sequestered calcium ion into cytosol by endoplasmic reticulum calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport establishment of localization calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport release of sequestered calcium ion into cytosol localization monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport biological process involved in interspecies interaction between organisms immune response response to other organism defense response response to type II interferon response to cytokine defense response to symbiont response to external stimulus cellular response to type II interferon response to biotic stimulus response to peptide response to chemical immune system process defense response to other organism response to stress innate immune response cellular response to cytokine stimulus response to external biotic stimulus inflammatory cell apoptotic process regulation of phosphatidylserine exposure on apoptotic cell surface regulation of localization regulation of phospholipid transport regulation of cellular component organization positive regulation of cellular component organization phospholipid translocation phospholipid transport regulation of lipid transport plasma membrane phospholipid scrambling execution phase of apoptosis plasma membrane organization phosphatidylserine exposure on apoptotic cell surface membrane organization regulation of transport lipid localization regulation of phospholipid translocation lipid transport positive regulation of lipid localization lipid translocation regulation of membrane lipid distribution positive regulation of phosphatidylserine exposure on apoptotic cell surface positive regulation of phospholipid translocation regulation of plasma membrane organization positive regulation of lipid transport positive regulation of transport regulation of lipid localization macromolecule localization organophosphate ester transport positive regulation of phospholipid transport response to endogenous stimulus response to growth factor positive regulation of endothelial cell apoptotic process endothelial cell apoptotic process regulation of endothelial cell apoptotic process multicellular organismal process regulation of developmental process negative regulation of biological process angiogenesis regulation of vasculature development multicellular organism development tube morphogenesis anatomical structure development regulation of multicellular organismal process regulation of anatomical structure morphogenesis system development blood vessel development developmental process regulation of multicellular organismal development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development anatomical structure morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis negative regulation of multicellular organismal process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular developmental process sensory organ development eye development animal organ development visual system development cell development programmed cell death involved in cell development eye morphogenesis sensory organ morphogenesis cell differentiation retinal cell programmed cell death animal organ morphogenesis sensory system development response to lipid response to oxygen-containing compound response to lipopolysaccharide response to bacterium response to molecule of bacterial origin	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle organelle lumen organelle cytoplasm lysosome extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle membrane microdomain membrane raft plasma membrane raft plasma membrane region caveola vesicle lumen intracellular vesicle cytoplasmic vesicle lumen cytoplasmic vesicle perinuclear region of cytoplasm nucleus
A [auth B]	Tumor necrosis factor receptor superfamily member 6B	molecular transducer activity signaling receptor activity	cellular process apoptotic process cell death programmed cell death regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death negative regulation of apoptotic process negative regulation of cellular process	cellular anatomical structure extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A]	IPR008983	Tumour necrosis factor-like domain superfamily	Homologous Superfamily
B [auth A]	IPR006052	Tumour necrosis factor domain	Domain
B [auth A]	IPR021184	Tumour necrosis factor, conserved site	Conserved Site
B [auth A]	IPR006053	Tumour necrosis factor	Family
B [auth A]	IPR028326	Tumor necrosis factor ligand superfamily member 6	Family
A [auth B]	IPR001368	TNFR/NGFR cysteine-rich region	Domain
A [auth B]	IPR052459	Tumor necrosis factor receptor superfamily decoy receptor	Family
A [auth B]	IPR034023	Tumor necrosis factor receptor 6B, N-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth A]	Pharos: P48023	autoimmune lymphoproliferative syndrome rheumatoid arthritis dilated cardiomyopathy cardiomyopathy melanoma hepatitis acute liver failure testicular disease acute lung injury prostate cancer diabetic peripheral angiopathy drug allergy atherosclerosis autoimmune lymphoproliferative syndrome type 1 non-small cell lung carcinoma autoimmune lymphoproliferative syndrome rheumatoid arthritis dilated cardiomyopathy cardiomyopathy melanoma hepatitis acute liver failure testicular disease acute lung injury prostate cancer diabetic peripheral angiopathy drug allergy atherosclerosis autoimmune lymphoproliferative syndrome type 1 non-small cell lung carcinoma carotid artery disease cutaneous lupus erythematosus External Carotid Artery Diseases arteriosclerosis disorder autoimmune disease osteosarcoma psoriasis cutaneous melanoma dilated cardiomyopathy 1A hepatocellular carcinoma lung benign neoplasm autoimmune lymphoproliferative syndrome type 2B tuberculosis celiac disease hematologic disease lung cancer cancer systemic lupus erythematosus vitiligo
A [auth B]	Pharos: O95407	allergic rhinitis colorectal adenoma cutaneous melanoma inflammatory bowel disease ulcerative colitis atopic eczema colorectal cancer glioblastoma marginal zone lymphoma brain glioma Crohn disease idiopathic pulmonary fibrosis prostate carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.