4NTO | pdb_00004nto

Crystal structure of D60A mutant of Arabidopsis ACD11 (accelerated-cell-death 11) complexed with C2 ceramide-1-phosphate (d18:1/2:0) at 2.15 Angstrom resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	e4ntoB1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: DUF4170	F:	ECOD (20:10:01)
C	e4ntoC1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: DUF4170	F:	ECOD (20:10:01)
A	e4ntoA1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: DUF4170	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.3520.10	Mainly Alpha	Orthogonal Bundle	Glycolipid transfer protein, GLTP	Glycolipid transfer protein	CATH (4.3.0)
C	1.10.3520.10	Mainly Alpha	Orthogonal Bundle	Glycolipid transfer protein, GLTP	Glycolipid transfer protein	CATH (4.3.0)
A	1.10.3520.10	Mainly Alpha	Orthogonal Bundle	Glycolipid transfer protein, GLTP	Glycolipid transfer protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF08718	Glycolipid transfer protein (GLTP) (GLTP)	Glycolipid transfer protein (GLTP)	GLTP is a cytosolic protein that catalyses the intermembrane transfer of glycolipids [1][2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	accelerated-cell-death 11	phospholipid transfer activity lipid transporter activity lipid transfer activity sphingolipid transfer activity sphingolipid transporter activity transporter activity ceramide transfer activity ceramide 1-phosphate transfer activity phospholipid transporter activity sphingomyelin transfer activity ceramide binding binding ion binding sphingolipid binding phospholipid transfer activity lipid transporter activity lipid transfer activity sphingolipid transfer activity sphingolipid transporter activity transporter activity ceramide transfer activity ceramide 1-phosphate transfer activity phospholipid transporter activity sphingomyelin transfer activity ceramide binding binding ion binding sphingolipid binding anion binding lipid binding phospholipid binding ceramide 1-phosphate binding small molecule binding	localization nitrogen compound transport ceramide transport transport macromolecule localization lipid localization lipid transport establishment of localization defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium localization nitrogen compound transport ceramide transport transport macromolecule localization lipid localization lipid transport establishment of localization defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus membrane organization intermembrane lipid transfer cellular component organization cellular process cellular component organization or biogenesis response to chemical response to oxygen-containing compound response to salicylic acid	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR036497	Glycolipid transfer protein superfamily	Homologous Superfamily
A, B, C	IPR014830	Glycolipid transfer protein domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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