4ODU | pdb_00004odu

Unliganded Fab structure of lipid A-specific antibody S1-15

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
D [auth A]d4odua_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth H]d4oduh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
C [auth B]d4odub2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
C [auth B]d4odub1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
A [auth L]d4odul2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
A [auth L]d4odul1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth A]GCD14e4oduA1 A: alpha bundlesX: Cytidine deaminase-likeH: Cytidine deaminase-likeT: Cytidine deaminase-likeF: GCD14ECOD (develop294)
D [auth A]EF-hand_1, EF-hand_6, EF-hand_7e4oduA2 A: alpha bundlesX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: EF-hand_1, EF-hand_6, EF-hand_7ECOD (develop294)
B [auth H]GCD14e4oduH2 A: alpha bundlesX: Cytidine deaminase-likeH: Cytidine deaminase-likeT: Cytidine deaminase-likeF: GCD14ECOD (develop294)
B [auth H]EF-hand_1, EF-hand_6, EF-hand_7e4oduH3 A: alpha bundlesX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: EF-hand_1, EF-hand_6, EF-hand_7ECOD (develop294)
C [auth B]GCD14e4oduB1 A: alpha bundlesX: Cytidine deaminase-likeH: Cytidine deaminase-likeT: Cytidine deaminase-likeF: GCD14ECOD (develop294)
A [auth L]GCD14e4oduL1 A: alpha bundlesX: Cytidine deaminase-likeH: Cytidine deaminase-likeT: Cytidine deaminase-likeF: GCD14ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth A]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth H],
D [auth A]		S1-15 Fab VH-CH1 Mus musculus (house mouse) IGHV10-1*02, IGHJ3*01, IGHG2B*01, IGHG2B*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-2B_KAPPA IMGT (202610-0)
A [auth L],
C [auth B]		S1-15 Fab L-KAPPA Mus musculus (house mouse) IGKV10-96*01, IGKJ1*01, IGKC*01, IGKC*02 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-2B_KAPPA IMGT (202610-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth H],
D [auth A]		Heavy ChainIGHV10 --SAbDab (2026-03-20)
A [auth L],
C [auth B]		Light ChainIGKV10 Kappa-SAbDab (2026-03-20)