4PLO | pdb_00004plo

Crystal Structure of chicken Netrin-1 (LN-LE3) in complex with mouse DCC (FN4-5)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth A]Laminin_Ne4ploA4 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: Laminin_NECOD (1.6)
B [auth A]Laminin_EGF_1e4ploA1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: Laminin_EGF_1ECOD (1.6)
B [auth A]Laminin_EGFe4ploA3 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: Laminin_EGFECOD (1.6)
B [auth A]Laminin_EGF_2e4ploA2 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: Laminin_EGF_2ECOD (1.6)
A [auth B]fn3e4ploB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: fn3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth A]2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (4.2.0)
A [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth A]PF24973Laminin/attractin EGF domain (EGF_LMN_ATRN)Laminin/attractin EGF domainThis entry represents the EGF-like domains found in laminin subunits (alpha, beta, gamma), attractin (ATRN), netrin, among others. ATRN is involved in the initial immune cell clustering during inflammatory response and may regulate chemotactic activi ...This entry represents the EGF-like domains found in laminin subunits (alpha, beta, gamma), attractin (ATRN), netrin, among others. ATRN is involved in the initial immune cell clustering during inflammatory response and may regulate chemotactic activity of chemokines. It may play a role in melanocortin signaling pathways that regulate energy homeostasis and hair color [1]. It was thought to have dipeptidase activity but it was shown later to lack that activity [2]. Laminins are crucial for the formation of stable basement membranes and organising receptor complexes and cytoskeletal components. Netrins control guidance of central nervous system commissural axons and peripheral motor axons, serving as survival factors and regulating apoptosis.
Domain
B [auth A]PF00053Laminin EGF domain (EGF_laminin)Laminin EGF domainThis family is like Pfam:PF00008 but has 8 conserved cysteines instead of six. Domain
B [auth A]PF00055Laminin N-terminal (Domain VI) (Laminin_N)Laminin N-terminal (Domain VI)Domain
A [auth B]PF00041Fibronectin type III domain (fn3)Fibronectin type III domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth A]Netrin-1-
A [auth B]Netrin receptor DCC-