4QPD | pdb_00004qpd

Crystal structure of the hydrolase domain of 10-formyltetrahydrofolate dehydrogenase (wild-type) complex with tetrahydrofolate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4qpdb2	All beta proteins	FMT C-terminal domain-like	FMT C-terminal domain-like	automated matches	automated matches	leopard danio,zebra danio,zebra fish (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
B	d4qpdb1	Alpha and beta proteins (a/b)	Formyltransferase	Formyltransferase	Formyltransferase	automated matches	leopard danio,zebra danio,zebra fish (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
A	d4qpda2	All beta proteins	FMT C-terminal domain-like	FMT C-terminal domain-like	automated matches	automated matches	leopard danio,zebra danio,zebra fish (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
A	d4qpda1	Alpha and beta proteins (a/b)	Formyltransferase	Formyltransferase	Formyltransferase	automated matches	leopard danio,zebra danio,zebra fish (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_S7	e4qpdB1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Ribosomal_S7	ECOD (develop294)
A	Ribosomal_S7	e4qpdA1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Ribosomal_S7	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Formyl transferase, N-terminal domain	CATH (4.3.0)
B	3.10.25.10	Alpha Beta	Roll	Methionyl-tRNA Fmet Formyltransferase	Chain A, domain 2	CATH (4.3.0)
A	3.40.50.170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Formyl transferase, N-terminal domain	CATH (4.3.0)
A	3.10.25.10	Alpha Beta	Roll	Methionyl-tRNA Fmet Formyltransferase	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02911	Formyl transferase, C-terminal domain (Formyl_trans_C)	Formyl transferase, C-terminal domain		Domain
A, B	PF00551	Formyl transferase (Formyl_trans_N)	Formyl transferase	This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces ...	This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	10-formyltetrahydrofolate dehydrogenase	hydrolase activity catalytic activity formyltetrahydrofolate dehydrogenase activity oxidoreductase activity oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on the CH-NH group of donors aldehyde dehydrogenase (NAD+) activity oxidoreductase activity, acting on the aldehyde or oxo group of donors aldehyde dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development embryonic organ morphogenesis embryonic viscerocranium morphogenesis embryonic cranial skeleton morphogenesis chordate embryonic development embryonic morphogenesis embryo development developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development embryonic organ morphogenesis embryonic viscerocranium morphogenesis embryonic cranial skeleton morphogenesis chordate embryonic development embryonic morphogenesis embryo development anatomical structure morphogenesis embryo development ending in birth or egg hatching skeletal system development cranial skeletal system development animal organ morphogenesis embryonic skeletal system development skeletal system morphogenesis embryonic organ development embryonic skeletal system morphogenesis gastrulation 10-formyltetrahydrofolate metabolic process catabolic process oxoacid metabolic process dicarboxylic acid metabolic process carboxylic acid metabolic process modified amino acid metabolic process dicarboxylic acid catabolic process organic acid metabolic process organic acid catabolic process modified amino acid catabolic process folic acid-containing compound catabolic process carboxylic acid catabolic process folic acid-containing compound metabolic process small molecule metabolic process metabolic process cellular process pteridine-containing compound catabolic process small molecule catabolic process pteridine-containing compound metabolic process tetrahydrofolate metabolic process 10-formyltetrahydrofolate catabolic process stem cell development neural crest cell differentiation cellular developmental process neural crest cell development cell development mesenchyme development tissue development mesenchymal cell migration stem cell differentiation cell differentiation ameboidal-type cell migration cell migration mesenchymal cell differentiation cell motility neural crest cell migration one-carbon metabolic process negative regulation of locomotion regulation of cell motility regulation of cellular process lateral line development sensory organ development negative regulation of biological process negative regulation of cellular process regulation of cell migration neuromast development sensory system development negative regulation of cell migration locomotion regulation of biological process biological regulation neuromast deposition lateral line system development regulation of locomotion negative regulation of cell motility	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015590	Aldehyde dehydrogenase domain	Domain
A, B	IPR016161	Aldehyde/histidinol dehydrogenase	Homologous Superfamily
A, B	IPR036477	Formyl transferase, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR037022	Formyl transferase, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR001555	Phosphoribosylglycinamide formyltransferase, active site	Active Site
A, B	IPR036736	ACP-like superfamily	Homologous Superfamily
A, B	IPR029510	Aldehyde dehydrogenase, glutamic acid active site	Conserved Site
A, B	IPR002376	Formyl transferase, N-terminal	Domain
A, B	IPR005793	Formyl transferase, C-terminal	Domain
A, B	IPR016160	Aldehyde dehydrogenase, cysteine active site	Conserved Site
A, B	IPR011034	Formyl transferase-like, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR009081	Phosphopantetheine binding ACP domain	Domain
A, B	IPR016162	Aldehyde dehydrogenase, N-terminal	Homologous Superfamily
A, B	IPR011407	10-formyltetrahydrofolate dehydrogenase	Family
A, B	IPR016163	Aldehyde dehydrogenase, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.