4RER | pdb_00004rer

Crystal structure of the phosphorylated human alpha1 beta2 gamma1 holo-AMPK complex bound to AMP and cyclodextrin


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyStarch-binding domain-like 8055087 3000816 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAMPKBI-like 8037381 3000446 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyProtein kinase-like (PK-like) 8081561 3000066 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyUBA-like 8090061 3001235 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth G]e4rerG1 A: Type III secretion system domain-likeX: Antibiotic binding domain of TipA-like multidrug resistance regulatorsH: Antibiotic binding domain of TipA-like multidrug resistance regulatorsT: RasF:ECOD (20:10:01)
Be4rerB1 A: Type III secretion system domain-likeX: Antibiotic binding domain of TipA-like multidrug resistance regulatorsH: Antibiotic binding domain of TipA-like multidrug resistance regulatorsT: RasF:ECOD (20:10:01)
Ae4rerA1 A: Type III secretion system domain-likeX: Antibiotic binding domain of TipA-like multidrug resistance regulatorsH: Antibiotic binding domain of TipA-like multidrug resistance regulatorsT: RasF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth G]PF00571CBS domain (CBS)CBS domainCBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ...CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet [5]. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet [4]. CBS domain pairs from AMPK bind AMP or ATP [5]. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP [5].
Domain
PF047395'-AMP-activated protein kinase beta subunit, interaction domain (AMPKBI)5'-AMP-activated protein kinase beta subunit, interaction domain- Family
PF16579Adenylate sensor of SNF1-like protein kinase (AdenylateSensor)Adenylate sensor of SNF1-like protein kinaseAdenylateSensor is a family found at the C-terminus of SNF1-like protein kinases snf other protein-kinases [1]. Domain
PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth G]5'-AMP-activated protein kinase subunit gamma-1
5'-AMP-activated protein kinase subunit beta-2
5'-AMP-activated protein kinase catalytic subunit alpha-1

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046
TPO Parent Component: THR

RESIDAA0037 , AA0038

PSI-MOD :  O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047