4USN | pdb_00004usn

The structure of the immature HIV-1 capsid in intact virus particles at sub-nm resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4usnB1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
E		e4usnE1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
K		e4usnK1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
L		e4usnL1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
M		e4usnM1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
R		e4usnR1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
Q		e4usnQ1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
P		e4usnP1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
O		e4usnO1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
N		e4usnN1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
J		e4usnJ1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
I		e4usnI1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
H		e4usnH1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
G		e4usnG1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
F		e4usnF1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
D		e4usnD1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
C		e4usnC1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)
A		e4usnA1	A: omega toxin-like	X: omega toxin-related	H: omega toxin-related	T: SRP14	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	P24	RNA binding binding nucleic acid binding	viral gene expression viral process viral translational frameshifting viral translation	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell plasma membrane host cell membrane viral nucleocapsid viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell plasma membrane host cell membrane viral nucleocapsid viral capsid virion component host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR050195	Primate lentivirus group Gag polyprotein-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.