4V4F | pdb_00004v4f

The structure of the trp RNA-binding attenuation protein (TRAP) bound to a RNA molecule containing UAGAU repeats

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth BI]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
Z [auth AP]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
YA [auth BH]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
Y [auth AO]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
XA [auth BG]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
X [auth AN]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
WA [auth BF]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
W [auth AM]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
VA [auth BE]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
V [auth AL]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
UA [auth BD]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
U [auth AK]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
TA [auth BC]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
T [auth AJ]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
SA [auth BB]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
S [auth AI]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
RA [auth BA]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
R [auth AH]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
Q [auth AG]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
P [auth AF]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
O [auth AE]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
N [auth AD]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
MB [auth BV]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
M [auth AC]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
LB [auth BU]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
L [auth AB]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
KB [auth BT]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
K [auth AA]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
JB [auth BS]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
IB [auth BR]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
HB [auth BQ]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
GB [auth BP]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
FB [auth BO]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
FA [auth AV]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
EB [auth BN]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
EA [auth AU]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
DB [auth BM]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
DA [auth AT]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
CB [auth BL]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
CA [auth AS]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
BB [auth BK]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
BA [auth AR]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
AB [auth BJ]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
AA [auth AQ]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth BI]	P22_portal	e4v4fBI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
Z [auth AP]	P22_portal	e4v4fAP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
YA [auth BH]	P22_portal	e4v4fBH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
Y [auth AO]	P22_portal	e4v4fAO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
XA [auth BG]	P22_portal	e4v4fBG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
X [auth AN]	P22_portal	e4v4fAN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
WA [auth BF]	P22_portal	e4v4fBF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
W [auth AM]	P22_portal	e4v4fAM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
VA [auth BE]	P22_portal	e4v4fBE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
V [auth AL]	P22_portal	e4v4fAL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
UA [auth BD]	P22_portal	e4v4fBD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
U [auth AK]	P22_portal	e4v4fAK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
TA [auth BC]	P22_portal	e4v4fBC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
T [auth AJ]	P22_portal	e4v4fAJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
SA [auth BB]	P22_portal	e4v4fBB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
S [auth AI]	P22_portal	e4v4fAI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
RA [auth BA]	P22_portal	e4v4fBA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
R [auth AH]	P22_portal	e4v4fAH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
Q [auth AG]	P22_portal	e4v4fAG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
P [auth AF]	P22_portal	e4v4fAF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
O [auth AE]	P22_portal	e4v4fAE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
N [auth AD]	P22_portal	e4v4fAD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
MB [auth BV]	P22_portal	e4v4fBV1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
M [auth AC]	P22_portal	e4v4fAC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
LB [auth BU]	P22_portal	e4v4fBU1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
L [auth AB]	P22_portal	e4v4fAB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
KB [auth BT]	P22_portal	e4v4fBT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
K [auth AA]	P22_portal	e4v4fAA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
JB [auth BS]	P22_portal	e4v4fBS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
IB [auth BR]	P22_portal	e4v4fBR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
HB [auth BQ]	P22_portal	e4v4fBQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
GB [auth BP]	P22_portal	e4v4fBP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
FB [auth BO]	P22_portal	e4v4fBO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
FA [auth AV]	P22_portal	e4v4fAV1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
EB [auth BN]	P22_portal	e4v4fBN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
EA [auth AU]	P22_portal	e4v4fAU1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
DB [auth BM]	P22_portal	e4v4fBM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
DA [auth AT]	P22_portal	e4v4fAT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
CB [auth BL]	P22_portal	e4v4fBL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
CA [auth AS]	P22_portal	e4v4fAS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
BB [auth BK]	P22_portal	e4v4fBK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
BA [auth AR]	P22_portal	e4v4fAR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
AB [auth BJ]	P22_portal	e4v4fBJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
AA [auth AQ]	P22_portal	e4v4fAQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth AQ], AB [auth BJ], BA [auth AR], BB [auth BK], CA [auth AS], AA [auth AQ], AB [auth BJ], BA [auth AR], BB [auth BK], CA [auth AS], CB [auth BL], DA [auth AT], DB [auth BM], EA [auth AU], EB [auth BN], FA [auth AV], FB [auth BO], GB [auth BP], HB [auth BQ], IB [auth BR], JB [auth BS], K [auth AA], KB [auth BT], L [auth AB], LB [auth BU], M [auth AC], MB [auth BV], N [auth AD], O [auth AE], P [auth AF], Q [auth AG], R [auth AH], RA [auth BA], S [auth AI], SA [auth BB], T [auth AJ], TA [auth BC], U [auth AK], UA [auth BD], V [auth AL], VA [auth BE], W [auth AM], WA [auth BF], X [auth AN], XA [auth BG], Y [auth AO], YA [auth BH], Z [auth AP], ZA [auth BI]	TRANSCRIPTION ATTENUATION PROTEIN MTRB	RNA binding binding nucleic acid binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	-
A [auth A0], B [auth A1], C [auth A2], D [auth A3], E [auth A4], A [auth A0], B [auth A1], C [auth A2], D [auth A3], E [auth A4], F [auth A5], G [auth A6], GA [auth AZ], H [auth A7], HA [auth B0], I [auth A8], IA [auth B1], J [auth A9], JA [auth B2], KA [auth B3], LA [auth B4], MA [auth B5], NA [auth B6], NB [auth BZ], OA [auth B7], PA [auth B8], QA [auth B9]	5'-R(UPAPGPAP*UP)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth AQ], AB [auth BJ], BA [auth AR], BB [auth BK], CA [auth AS], AA [auth AQ], AB [auth BJ], BA [auth AR], BB [auth BK], CA [auth AS], CB [auth BL], DA [auth AT], DB [auth BM], EA [auth AU], EB [auth BN], FA [auth AV], FB [auth BO], GB [auth BP], HB [auth BQ], IB [auth BR], JB [auth BS], K [auth AA], KB [auth BT], L [auth AB], LB [auth BU], M [auth AC], MB [auth BV], N [auth AD], O [auth AE], P [auth AF], Q [auth AG], R [auth AH], RA [auth BA], S [auth AI], SA [auth BB], T [auth AJ], TA [auth BC], U [auth AK], UA [auth BD], V [auth AL], VA [auth BE], W [auth AM], WA [auth BF], X [auth AN], XA [auth BG], Y [auth AO], YA [auth BH], Z [auth AP], ZA [auth BI]	IPR016031	Tryptophan RNA-binding attenuator protein-like domain superfamily	Homologous Superfamily
AA [auth AQ], AB [auth BJ], BA [auth AR], BB [auth BK], CA [auth AS], AA [auth AQ], AB [auth BJ], BA [auth AR], BB [auth BK], CA [auth AS], CB [auth BL], DA [auth AT], DB [auth BM], EA [auth AU], EB [auth BN], FA [auth AV], FB [auth BO], GB [auth BP], HB [auth BQ], IB [auth BR], JB [auth BS], K [auth AA], KB [auth BT], L [auth AB], LB [auth BU], M [auth AC], MB [auth BV], N [auth AD], O [auth AE], P [auth AF], Q [auth AG], R [auth AH], RA [auth BA], S [auth AI], SA [auth BB], T [auth AJ], TA [auth BC], U [auth AK], UA [auth BD], V [auth AL], VA [auth BE], W [auth AM], WA [auth BF], X [auth AN], XA [auth BG], Y [auth AO], YA [auth BH], Z [auth AP], ZA [auth BI]	IPR000824	Transcription attenuation protein MtrB	Family
AA [auth AQ], AB [auth BJ], BA [auth AR], BB [auth BK], CA [auth AS], AA [auth AQ], AB [auth BJ], BA [auth AR], BB [auth BK], CA [auth AS], CB [auth BL], DA [auth AT], DB [auth BM], EA [auth AU], EB [auth BN], FA [auth AV], FB [auth BO], GB [auth BP], HB [auth BQ], IB [auth BR], JB [auth BS], K [auth AA], KB [auth BT], L [auth AB], LB [auth BU], M [auth AC], MB [auth BV], N [auth AD], O [auth AE], P [auth AF], Q [auth AG], R [auth AH], RA [auth BA], S [auth AI], SA [auth BB], T [auth AJ], TA [auth BC], U [auth AK], UA [auth BD], V [auth AL], VA [auth BE], W [auth AM], WA [auth BF], X [auth AN], XA [auth BG], Y [auth AO], YA [auth BH], Z [auth AP], ZA [auth BI]	IPR023558	Tryptophan RNA-binding attenuator protein domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.