4V4K | pdb_00004v4k

Bacteriophage P22 Portal Protein bound to middle Tail Factor GP4. This file contain the second biological assembly

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X [auth v]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
W [auth u]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
VA [auth j]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
V [auth t]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
UA [auth i]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
U [auth s]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
TA [auth h]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
T [auth r]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
SA [auth g]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
S [auth q]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
RA [auth f]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
R [auth p]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
QA [auth e]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
Q [auth o]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
PA [auth d]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
P [auth n]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
OA [auth c]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
O [auth m]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
NA [auth b]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
N [auth l]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
MA [auth a]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
M [auth k]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
LA [auth Z]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
KA [auth Y]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth v]	Ribosomal_S4e	e4v4kv1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
W [auth u]	Ribosomal_S4e	e4v4ku1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
VA [auth j]	Ribosomal_S4e	e4v4kj1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
V [auth t]	Ribosomal_S4e	e4v4kt1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
UA [auth i]	Ribosomal_S4e	e4v4ki1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
U [auth s]	Ribosomal_S4e	e4v4ks1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
TA [auth h]	Ribosomal_S4e	e4v4kh1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
T [auth r]	Ribosomal_S4e	e4v4kr1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
SA [auth g]	Ribosomal_S4e	e4v4kg1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
S [auth q]	Ribosomal_S4e	e4v4kq1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
RA [auth f]	Ribosomal_S4e	e4v4kf1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
R [auth p]	Ribosomal_S4e	e4v4kp1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
QA [auth e]	Ribosomal_S4e	e4v4ke1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
Q [auth o]	Ribosomal_S4e	e4v4ko1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
PA [auth d]	Ribosomal_S4e	e4v4kd1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
P [auth n]	Ribosomal_S4e	e4v4kn1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
OA [auth c]	Ribosomal_S4e	e4v4kc1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
O [auth m]	Ribosomal_S4e	e4v4km1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
NA [auth b]	Ribosomal_S4e	e4v4kb1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
N [auth l]	Ribosomal_S4e	e4v4kl1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
MA [auth a]	Ribosomal_S4e	e4v4ka1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
M [auth k]	Ribosomal_S4e	e4v4kk1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
LA [auth Z]	Ribosomal_S4e	e4v4kZ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
KA [auth Y]	Ribosomal_S4e	e4v4kY1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_S4e	ECOD (v295)
Z [auth B]	P22_portal	e4v4kB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
Y [auth A]	P22_portal	e4v4kA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
L [auth X]	P22_portal	e4v4kX1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
K [auth W]	P22_portal	e4v4kW1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
JA [auth L]	P22_portal	e4v4kL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
J [auth V]	P22_portal	e4v4kV1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
IA [auth K]	P22_portal	e4v4kK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
I [auth U]	P22_portal	e4v4kU1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
HA [auth J]	P22_portal	e4v4kJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
H [auth T]	P22_portal	e4v4kT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
GA [auth I]	P22_portal	e4v4kI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
G [auth S]	P22_portal	e4v4kS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
FA [auth H]	P22_portal	e4v4kH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
F [auth R]	P22_portal	e4v4kR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
EA [auth G]	P22_portal	e4v4kG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
E [auth Q]	P22_portal	e4v4kQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
DA [auth F]	P22_portal	e4v4kF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
D [auth P]	P22_portal	e4v4kP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
CA [auth E]	P22_portal	e4v4kE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
C [auth O]	P22_portal	e4v4kO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
BA [auth D]	P22_portal	e4v4kD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
B [auth N]	P22_portal	e4v4kN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
AA [auth C]	P22_portal	e4v4kC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)
A [auth M]	P22_portal	e4v4kM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: P22_portal	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth M], AA [auth C], B [auth N], BA [auth D], C [auth O], A [auth M], AA [auth C], B [auth N], BA [auth D], C [auth O], CA [auth E], D [auth P], DA [auth F], E [auth Q], EA [auth G], F [auth R], FA [auth H], G [auth S], GA [auth I], H [auth T], HA [auth J], I [auth U], IA [auth K], J [auth V], JA [auth L], K [auth W], L [auth X], Y [auth A], Z [auth B]	PF16510	Phage P22-like portal protein (P22_portal)	Phage P22-like portal protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
KA [auth Y], LA [auth Z], M [auth k], MA [auth a], N [auth l], KA [auth Y], LA [auth Z], M [auth k], MA [auth a], N [auth l], NA [auth b], O [auth m], OA [auth c], P [auth n], PA [auth d], Q [auth o], QA [auth e], R [auth p], RA [auth f], S [auth q], SA [auth g], T [auth r], TA [auth h], U [auth s], UA [auth i], V [auth t], VA [auth j], W [auth u], X [auth v]	PACKAGED DNA STABILIZATION PROTEIN GP4	hydrolase activity catalytic activity	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, short tail mechanism symbiont entry into host cell via disruption of host cell envelope	virus tail virion component
A [auth M], AA [auth C], B [auth N], BA [auth D], C [auth O], A [auth M], AA [auth C], B [auth N], BA [auth D], C [auth O], CA [auth E], D [auth P], DA [auth F], E [auth Q], EA [auth G], F [auth R], FA [auth H], G [auth S], GA [auth I], H [auth T], HA [auth J], I [auth U], IA [auth K], J [auth V], JA [auth L], K [auth W], L [auth X], Y [auth A], Z [auth B]	PORTAL PROTEIN	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction viral DNA genome packaging, headful	protein-containing complex viral capsid virion component viral portal complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
KA [auth Y], LA [auth Z], M [auth k], MA [auth a], N [auth l], KA [auth Y], LA [auth Z], M [auth k], MA [auth a], N [auth l], NA [auth b], O [auth m], OA [auth c], P [auth n], PA [auth d], Q [auth o], QA [auth e], R [auth p], RA [auth f], S [auth q], SA [auth g], T [auth r], TA [auth h], U [auth s], UA [auth i], V [auth t], VA [auth j], W [auth u], X [auth v]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
KA [auth Y], LA [auth Z], M [auth k], MA [auth a], N [auth l], KA [auth Y], LA [auth Z], M [auth k], MA [auth a], N [auth l], NA [auth b], O [auth m], OA [auth c], P [auth n], PA [auth d], Q [auth o], QA [auth e], R [auth p], RA [auth f], S [auth q], SA [auth g], T [auth r], TA [auth h], U [auth s], UA [auth i], V [auth t], VA [auth j], W [auth u], X [auth v]	IPR020362	Tail accessory factor GP4	Family
A [auth M], AA [auth C], B [auth N], BA [auth D], C [auth O], A [auth M], AA [auth C], B [auth N], BA [auth D], C [auth O], CA [auth E], D [auth P], DA [auth F], E [auth Q], EA [auth G], F [auth R], FA [auth H], G [auth S], GA [auth I], H [auth T], HA [auth J], I [auth U], IA [auth K], J [auth V], JA [auth L], K [auth W], L [auth X], Y [auth A], Z [auth B]	IPR032427	Phage P22-like portal protein	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.