4V9E | pdb_00004v9e

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded RNA.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth BE]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Y [auth BD]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
X [auth BC]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
W [auth BB]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
V [auth BA]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
R [auth AR]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Q [auth AQ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
P [auth AP]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
O [auth AO]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
N [auth AN]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
MA [auth BR]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
M [auth AM]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
LA [auth BQ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
L [auth AL]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
KA [auth BP]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
K [auth AK]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
JA [auth BO]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
J [auth AJ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
IA [auth BN]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
I [auth AI]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
HA [auth BM]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
H [auth AH]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
GA [auth BL]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
G [auth AG]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
FA [auth BK]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
F [auth AF]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
EA [auth BJ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
E [auth AE]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
DA [auth BI]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
D [auth AD]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
CA [auth BH]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
C [auth AC]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
BA [auth BG]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
B [auth AB]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
AA [auth BF]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
A [auth AA]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth BE]	e4v9eBE1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
Y [auth BD]	e4v9eBD1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
X [auth BC]	e4v9eBC1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
W [auth BB]	e4v9eBB1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
V [auth BA]	e4v9eBA1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
R [auth AR]	e4v9eAR1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
Q [auth AQ]	e4v9eAQ1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
P [auth AP]	e4v9eAP1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
O [auth AO]	e4v9eAO1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
N [auth AN]	e4v9eAN1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
MA [auth BR]	e4v9eBR1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
M [auth AM]	e4v9eAM1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
LA [auth BQ]	e4v9eBQ1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
L [auth AL]	e4v9eAL1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
KA [auth BP]	e4v9eBP1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
K [auth AK]	e4v9eAK1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
JA [auth BO]	e4v9eBO1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
J [auth AJ]	e4v9eAJ1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
IA [auth BN]	e4v9eBN1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
I [auth AI]	e4v9eAI1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
HA [auth BM]	e4v9eBM1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
H [auth AH]	e4v9eAH1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
GA [auth BL]	e4v9eBL1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
G [auth AG]	e4v9eAG1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
FA [auth BK]	e4v9eBK1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
F [auth AF]	e4v9eAF1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
EA [auth BJ]	e4v9eBJ1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
E [auth AE]	e4v9eAE1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
DA [auth BI]	e4v9eBI1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
D [auth AD]	e4v9eAD1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
CA [auth BH]	e4v9eBH1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
C [auth AC]	e4v9eAC1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
BA [auth BG]	e4v9eBG1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
B [auth AB]	e4v9eAB1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
AA [auth BF]	e4v9eBF1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)
A [auth AA]	e4v9eAA1	A: Type III secretion system domain-like	X: Antibiotic binding domain of TipA-like multidrug resistance regulators	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: TTL, ATPgrasp_YheCD	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
NA [auth Ba], OA [auth Bg], PA [auth Bm], S [auth Aa], T [auth Ag], NA [auth Ba], OA [auth Bg], PA [auth Bm], S [auth Aa], T [auth Ag], U [auth Am]	35-mer poly(U) RNA	-	-	-
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	Nucleocapsid protein	RNA binding binding nucleic acid binding identical protein binding protein binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	IPR015971	Nucleocapsid, Phlebovirus	Family
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family