The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth H] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8093892 | 3000433 | SCOP2B (2022-06-29) |
| H [auth G] | SCOP2B Superfamily | Ribosomal protein L13 | 8066059 | 3001134 | SCOP2B (2022-06-29) |
| E [auth C] | SCOP2B Superfamily | Ribosomal protein L4 | 8094174 | 3001146 | SCOP2B (2022-06-29) |
| D [auth B] | SCOP2B Superfamily | Translational proteins | 8089152 | 3000811 | SCOP2B (2022-06-29) |
| BA [auth 4] | SCOP2B Superfamily | Ribosomal protein L36 | 8083312 | 3001346 | SCOP2B (2022-06-29) |
| AA [auth 3] | SCOP2B Superfamily | L35p-like | 8083334 | 3000790 | SCOP2B (2022-06-29) |
| Y [auth Z] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8081583 | 3001320 | SCOP2B (2022-06-29) |
| X [auth W] | SCOP2 Family | Ribosomal protein L30p/L7e | 8076280 | 4001360 | SCOP2 (2022-06-29) |
| X [auth W] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8076281 | 3001378 | SCOP2 (2022-06-29) |
| W [auth V] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8094170 | 3000713 | SCOP2B (2022-06-29) |
| U [auth T] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8075030 | 3000539 | SCOP2B (2022-06-29) |
| T [auth S] | SCOP2B Superfamily | Ribosomal protein L25-like | 8082277 | 3001161 | SCOP2B (2022-06-29) |
| S [auth R] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082503 | 3000334 | SCOP2B (2022-06-29) |
| R [auth Q] | SCOP2 Family | L23p | 8086045 | 4000943 | SCOP2 (2022-06-29) |
| R [auth Q] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8086046 | 3000210 | SCOP2 (2022-06-29) |
| Q [auth P] | SCOP2B Superfamily | Ribosomal protein L22 | 8076726 | 3001078 | SCOP2B (2022-06-29) |
| P [auth O] | SCOP2B Superfamily | l21p-like | 8094148 | 3002005 | SCOP2B (2022-06-29) |
| O [auth N] | SCOP2B Superfamily | Ribosomal protein L20 | 8094941 | 3000563 | SCOP2B (2022-06-29) |
| N [auth M] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082423 | 3000334 | SCOP2B (2022-06-29) |
| L [auth K] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089022 | 3000995 | SCOP2B (2022-06-29) |
| K [auth J] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076041 | 3000884 | SCOP2B (2022-06-29) |
| J [auth I] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070555 | 3001045 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth H] | e4wfaH1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| H [auth G] | e4wfaG1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| G [auth E] | e4wfaE1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| F [auth D] | e4wfaD1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| E [auth C] | e4wfaC1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| D [auth B] | e4wfaB1 | A: HSP20-like | X: profilin-like | H: C-terminal domain in DHH phosphoesterases | T: PemK_toxin | F: | ECOD (20:10:01) | |
| C [auth A] | e4wfaA1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| BA [auth 4] | e4wfa41 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| AA [auth 3] | e4wfa31 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| Z [auth 2] | e4wfa21 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| Y [auth Z] | e4wfaZ1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| X [auth W] | e4wfaW1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| W [auth V] | e4wfaV1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| V [auth U] | e4wfaU1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| U [auth T] | e4wfaT1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| T [auth S] | e4wfaS1 | A: Lipocalins/Streptavidin | X: SAM/DNA-glycosylase | H: SAM domain-like | T: EF-hand_1, EF-hand_6, EF-hand_7 | F: | ECOD (20:10:01) | |
| S [auth R] | e4wfaR1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| R [auth Q] | e4wfaQ1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| Q [auth P] | e4wfaP1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| P [auth O] | e4wfaO1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| O [auth N] | e4wfaN1 | A: HSP20-like | X: profilin-like | H: C-terminal domain in DHH phosphoesterases | T: PemK_toxin | F: | ECOD (20:10:01) | |
| N [auth M] | e4wfaM1 | A: HSP20-like | X: HSP20-like chaperones | H: HSP20-like chaperones | T: Dynamin_N | F: | ECOD (20:10:01) | |
| M [auth L] | e4wfaL1 | A: HSP20-like | X: profilin-like | H: C-terminal domain in DHH phosphoesterases | T: PemK_toxin | F: | ECOD (20:10:01) | |
| L [auth K] | e4wfaK1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| K [auth J] | e4wfaJ1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: | F: | ECOD (20:10:01) | |
| J [auth I] | e4wfaI1 | A: HSP20-like | X: profilin-like | H: C-terminal domain in DHH phosphoesterases | T: PemK_toxin | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth H] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| H [auth G] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| G [auth E] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| F [auth D] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| F [auth D] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| E [auth C] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| D [auth B] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| C [auth A] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| C [auth A] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| BA [auth 4] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| AA [auth 3] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| Z [auth 2] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| Y [auth Z] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| X [auth W] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| W [auth V] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| S [auth R] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| S [auth R] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| R [auth Q] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| Q [auth P] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| P [auth O] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| O [auth N] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| N [auth M] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| M [auth L] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| L [auth K] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| K [auth J] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| J [auth I] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |














