4WZJ | pdb_00004wzj

Spliceosomal U4 snRNP core domain


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
YB [auth NNNN]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
WA [auth GGG]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
USCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
RB [auth GGGG]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
PA [auth UU]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
NSCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
KB [auth UUU]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
IA [auth NN]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
GSCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
FC [auth UUUU]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
DB [auth NNN]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
BA [auth GG]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
XB [auth LLLL]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
VA [auth EEE]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
T [auth S]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
QB [auth EEEE]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
OA [auth SS]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
JB [auth SSS]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
HA [auth LL]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
EC [auth SSSS]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
CB [auth LLL]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
AA [auth EE]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
Z [auth FF]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
WB [auth MMMM]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
UA [auth FFF]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
PB [auth FFFF]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
NA [auth TT]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
IB [auth TTT]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
GA [auth MM]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
DC [auth TTTT]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
BB [auth MMM]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
Y [auth DD]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
VB [auth KKKK]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
TA [auth DDD]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
RSCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
OB [auth DDDD]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
MA [auth RR]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
HB [auth RRR]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
FA [auth KK]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
CC [auth RRRR]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
AB [auth KKK]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
ZA [auth JJJ]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
X [auth CC]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
UB [auth JJJJ]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
SA [auth CCC]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
QSCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
NB [auth CCCC]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
LA [auth QQ]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
GB [auth QQQ]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
EA [auth JJ]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
BC [auth QQQQ]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
YA [auth III]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
W [auth BB]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
TB [auth IIII]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
RA [auth BBB]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
PSCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
MB [auth BBBB]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
KA [auth PP]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
FB [auth PPP]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
DA [auth II]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
AC [auth PPPP]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
ZB [auth OOOO]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
XA [auth HHH]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
V [auth AA]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
SB [auth HHHH]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
QA [auth AAA]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
OSCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
LB [auth AAAA]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
JA [auth OO]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
EB [auth OOO]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
CA [auth HH]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
YB [auth NNNN]e4wzjNNNN1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
WA [auth GGG]e4wzjGGG1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Ue4wzjU1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
RB [auth GGGG]e4wzjGGGG1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
PA [auth UU]e4wzjUU1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Ne4wzjN1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
KB [auth UUU]e4wzjUUU1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
IA [auth NN]e4wzjNN1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Ge4wzjG1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
FC [auth UUUU]e4wzjUUUU1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
DB [auth NNN]e4wzjNNN1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
BA [auth GG]e4wzjGG1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
XB [auth LLLL]e4wzjLLLL1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
VA [auth EEE]e4wzjEEE1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
T [auth S]e4wzjS1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
QB [auth EEEE]e4wzjEEEE1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
OA [auth SS]e4wzjSS1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
M [auth L]e4wzjL1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
JB [auth SSS]e4wzjSSS1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
HA [auth LL]e4wzjLL1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
F [auth E]e4wzjE1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
EC [auth SSSS]e4wzjSSSS1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
CB [auth LLL]e4wzjLLL1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
AA [auth EE]e4wzjEE1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Z [auth FF]e4wzjFF1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
WB [auth MMMM]e4wzjMMMM1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
UA [auth FFF]e4wzjFFF1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
S [auth T]e4wzjT1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
PB [auth FFFF]e4wzjFFFF1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
NA [auth TT]e4wzjTT1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
L [auth M]e4wzjM1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
IB [auth TTT]e4wzjTTT1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
GA [auth MM]e4wzjMM1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
E [auth F]e4wzjF1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
DC [auth TTTT]e4wzjTTTT1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
BB [auth MMM]e4wzjMMM1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Y [auth DD]e4wzjDD1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
VB [auth KKKK]e4wzjKKKK1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
TA [auth DDD]e4wzjDDD1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Re4wzjR1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
OB [auth DDDD]e4wzjDDDD1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
MA [auth RR]e4wzjRR1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Ke4wzjK1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
HB [auth RRR]e4wzjRRR1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
FA [auth KK]e4wzjKK1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
De4wzjD1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
CC [auth RRRR]e4wzjRRRR1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
AB [auth KKK]e4wzjKKK1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
ZA [auth JJJ]e4wzjJJJ1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
X [auth CC]e4wzjCC1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
UB [auth JJJJ]e4wzjJJJJ1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
SA [auth CCC]e4wzjCCC1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Qe4wzjQ1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
NB [auth CCCC]e4wzjCCCC1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
LA [auth QQ]e4wzjQQ1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Je4wzjJ1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
GB [auth QQQ]e4wzjQQQ1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
EA [auth JJ]e4wzjJJ1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Ce4wzjC1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
BC [auth QQQQ]e4wzjQQQQ1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
YA [auth III]e4wzjIII1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
W [auth BB]e4wzjBB1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
TB [auth IIII]e4wzjIIII1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
RA [auth BBB]e4wzjBBB1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Pe4wzjP1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
MB [auth BBBB]e4wzjBBBB1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
KA [auth PP]e4wzjPP1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Ie4wzjI1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
FB [auth PPP]e4wzjPPP1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
DA [auth II]e4wzjII1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Be4wzjB1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
AC [auth PPPP]e4wzjPPPP1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
ZB [auth OOOO]e4wzjOOOO1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
XA [auth HHH]e4wzjHHH1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
V [auth AA]e4wzjAA1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
SB [auth HHHH]e4wzjHHHH1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
QA [auth AAA]e4wzjAAA1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Oe4wzjO1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
LB [auth AAAA]e4wzjAAAA1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
JA [auth OO]e4wzjOO1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
He4wzjH1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
EB [auth OOO]e4wzjOOO1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
CA [auth HH]e4wzjHH1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)
Ae4wzjA1 A: Rubredoxin-likeX: Rubredoxin-relatedH: Rubredoxin-relatedT: RasF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.---
Small nuclear ribonucleoprotein G
Small nuclear ribonucleoprotein E
Small nuclear ribonucleoprotein F
Small nuclear ribonucleoprotein Sm D2
Small nuclear ribonucleoprotein Sm D1
Small nuclear ribonucleoprotein-associated proteins B and B'
Small nuclear ribonucleoprotein Sm D3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR044641Sm-like protein Lsm7/SmGFamily
IPR034098Small nuclear ribonucleoprotein GFamily
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IPR047575Sm domainDomain
IPR010920LSM domain superfamilyHomologous Superfamily
IPR027078Small nuclear ribonucleoprotein EFamily
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IPR047575Sm domainDomain
IPR010920LSM domain superfamilyHomologous Superfamily
IPR016487Sm-like protein Lsm6/SmFFamily
IPR034100Small nuclear ribonucleoprotein FFamily
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IPR047575Sm domainDomain
IPR010920LSM domain superfamilyHomologous Superfamily
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IPR047575Sm domainDomain
IPR027248Small nuclear ribonucleoprotein Sm D2Family
IPR010920LSM domain superfamilyHomologous Superfamily
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
IPR034102Small nuclear ribonucleoprotein D1Domain
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IPR047575Sm domainDomain
IPR010920LSM domain superfamilyHomologous Superfamily
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IPR017131Small ribonucleoprotein associated, SmB/SmNFamily
IPR047575Sm domainDomain
IPR010920LSM domain superfamilyHomologous Superfamily
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
IPR034099Small nuclear ribonucleoprotein Sm D3Family
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IPR047575Sm domainDomain
IPR010920LSM domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP62308
PharosP62304
PharosP62306
PharosP62316
PharosP62314
PharosP14678
PharosP62318