4XVU | pdb_00004xvu

Structure of Get3 bound to the transmembrane domain of Nyv1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Cupin_1	e4xvuL1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
J	Cupin_1	e4xvuJ1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
F	Cupin_1	e4xvuF1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
D	Cupin_1	e4xvuD1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
K	Cupin_1	e4xvuK1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
I	Cupin_1	e4xvuI1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
E	Cupin_1	e4xvuE1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
C	Cupin_1	e4xvuC1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
H	Cupin_1	e4xvuH1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
G	Cupin_1	e4xvuG1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
B	Cupin_1	e4xvuB1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Cupin_1	ECOD (develop294)
A	Sigma70_r3	e4xvuA1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: Sigma70_r3	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
J	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
F	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
K	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
I	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
E	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
H	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
G	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
D, F, J, L	Antibody	L-KAPPA	Homo sapiens (human)	IGKV1-3901, IGKV1D-3901, IGKJ101, IGKC01	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-1_KAPPA	IMGT (202610-0)
C, E, I, K	Antibody	VH-CH1	Homo sapiens (human)	IGHV3-7401, IGHV3-7402, IGHJ401, IGHJ402, IGHJ403, IGHG101, IGHG102, IGHG104, IGHG1*05	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_KAPPA	IMGT (202610-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
D, F, J, L	Light Chain	IGKV1	Kappa	atpase get3, nyv1 tmd	SAbDab (2026-03-20)
C, E, I, K	Heavy Chain	IGHV3	-	atpase get3, nyv1 tmd	SAbDab (2026-03-20)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, G, H	PF02374	Anion-transporting ATPase (ArsA_ATPase)	Anion-transporting ATPase	This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth g], N [auth a]	Nyv1 TMD	-	-	-
D, F, J, L	Antibody light chain	-	-	-
C, E, I, K	Antibody heavy chain	-	-	-
A, B, G, H	ATPase GET3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity protein folding chaperone cation binding metal ion binding identical protein binding	membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization tail-anchored membrane protein insertion into ER membrane protein targeting post-translational protein targeting to endoplasmic reticulum membrane protein targeting to membrane establishment of protein localization to organelle establishment of protein localization to endoplasmic reticulum protein targeting to ER response to stimulus response to metal ion response to chemical cellular response to stimulus response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Golgi vesicle transport vesicle-mediated transport regulation of cellular process sexual reproduction signaling regulation of reproductive process reproductive process positive regulation of biological process regulation of conjugation with cellular fusion response to pheromone cellular response to pheromone cell communication positive regulation of conjugation with cellular fusion signal transduction positive regulation of reproductive process pheromone-dependent signal transduction involved in conjugation with cellular fusion regulation of biological process signal transduction involved in positive regulation of conjugation with cellular fusion biological regulation conjugation with cellular fusion response to pheromone triggering conjugation with cellular fusion response to heat response to abiotic stimulus response to temperature stimulus response to arsenic-containing substance	membrane-bounded organelle protein-containing complex intracellular anatomical structure intracellular membrane-bounded organelle endomembrane system GET complex intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm endoplasmic reticulum protein-containing complex cytosol organelle subcompartment membrane-bounded organelle protein-containing complex intracellular anatomical structure intracellular membrane-bounded organelle endomembrane system GET complex intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm endoplasmic reticulum protein-containing complex cytosol organelle subcompartment membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane endoplasmic reticulum membrane Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, G, H	IPR027542	Arsenical pump ATPase, ArsA/GET3, eukaryotic	Family
A, B, G, H	IPR016300	Arsenical pump ATPase, ArsA/GET3	Family
A, B, G, H	IPR025723	ArsA/GET3, Anion-transporting ATPase-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.