5AFU | pdb_00005afu

Cryo-EM structure of dynein tail-dynactin-BICD2N complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
R [auth L]SCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077550 3001499 SCOP2B (2022-06-29)
Q [auth K]SCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077311 3001499 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
R [auth L]e5afuL1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
Q [auth K]e5afuK1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
P [auth J]e5afuJ1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
N [auth H]e5afuH1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
I [auth C]e5afuC1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
O [auth I]e5afuI1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
M [auth G]e5afuG1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
L [auth F]e5afuF1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
K [auth E]e5afuE1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
J [auth D]e5afuD1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
H [auth B]e5afuB1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
G [auth A]e5afuA1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
D [auth 4]e5afu41 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
C [auth 3]e5afu31 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Tcp10_CF:ECOD (20:10:01)
Z [auth V]e5afuV1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)
Y [auth U]e5afuU1 A: Anticodon-binding domain of Class II aaRSX: Anticodon-binding domain of Class II aaRSH: Anticodon-binding domain of Class II aaRST: Flavodoxin_2F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
R [auth L]1.20.58.570 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1CATH (4.3.0)
R [auth L]3.90.1150.210 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 F-actin capping protein, beta subunitCATH (4.3.0)
Q [auth K]3.30.1140.60 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain F-actin capping protein, alpha subunitCATH (4.3.0)
Q [auth K]3.90.1150.210 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 F-actin capping protein, beta subunitCATH (4.3.0)
N [auth H]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
N [auth H]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
I [auth C]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
I [auth C]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
O [auth I]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
O [auth I]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
M [auth G]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
M [auth G]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
L [auth F]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
L [auth F]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
K [auth E]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
K [auth E]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
J [auth D]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
J [auth D]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
H [auth B]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
H [auth B]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
G [auth A]3.30.420.40 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
G [auth A]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (4.3.0)
D [auth 4]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
C [auth 3]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
Z [auth V]2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase domain 1CATH (4.3.0)
Y [auth U]2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase domain 1CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
R [auth L]F-ACTIN CAPPING PROTEIN BETA SUBUNIT VARIANT II
Q [auth K]CAPPING PROTEIN (ACTIN FILAMENT) MUSCLE Z-LINE, ALPHA 1
P [auth J]DYNACTIN-
N [auth H]ACTIN, CYTOPLASMIC 1
DYNACTIN -
E [auth 5],
F [auth 6]
DYNEIN TAIL---
C [auth 3],
D [auth 4]
DYNEIN TAIL- - -
GA [auth z]F-ACTIN-CAPPING PROTEIN SUBUNIT BETA---
FA [auth d]DYNACTIN- - -
EA [auth c]DYNACTIN- - -
B [auth 2]DYNEIN TAIL---
DA [auth b]DYNACTIN-
CA [auth a]DYNACTIN- - -
BA [auth Z]F-ACTIN-CAPPING PROTEIN SUBUNIT BETA---
AA [auth Y]F-ACTIN-CAPPING PROTEIN SUBUNIT BETA---
Z [auth V]DYNACTIN-
Y [auth U]DYNACTIN
W [auth Q],
X [auth R]
DYNACTIN---
U [auth O],
V [auth P]
DYNACTIN---
T [auth N]DYNACTIN 6---
S [auth M]DYNACTIN---
A [auth 1]DYNEIN TAIL---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
R [auth L]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
R [auth L]IPR019771F-actin capping protein, beta subunit, conserved siteConserved Site
R [auth L]IPR001698F-actin-capping protein subunit betaFamily
R [auth L]IPR043175F-actin-capping protein subunit beta, N-terminal domainHomologous Superfamily
R [auth L]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
Q [auth K]IPR002189F-actin-capping protein subunit alphaFamily
Q [auth K]IPR042489F-actin capping protein, alpha subunit, domain 1Homologous Superfamily
Q [auth K]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
Q [auth K]IPR017865F-actin capping protein, alpha subunit, conserved siteConserved Site
Q [auth K]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
P [auth J]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
P [auth J]IPR004000Actin familyFamily
N [auth H]IPR020902Actin/actin-like conserved siteConserved Site
N [auth H]IPR004001Actin, conserved siteConserved Site
N [auth H]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
N [auth H]IPR004000Actin familyFamily
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
C [auth 3],
D [auth 4]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
C [auth 3],
D [auth 4]
IPR001680WD40 repeatRepeat
C [auth 3],
D [auth 4]
IPR019775WD40 repeat, conserved siteConserved Site
C [auth 3],
D [auth 4]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth 3],
D [auth 4]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth b]IPR028133DynamitinFamily
Z [auth V]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
Z [auth V]IPR047125Dynactin subunit 5Family
Y [auth U]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
Y [auth U]IPR027777Dynactin subunit 6Family