5AZB | pdb_00005azb

Crystal structure of Escherichia coli Lgt in complex with phosphatidylglycerol and the inhibitor palmitic acid

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	E3_UbLigase_RBR	e5azbA1	A: alpha bundles	X: E3 ligase HOIP C-terminal domain	H: E3 ligase HOIP C-terminal domain	T: E3 ligase HOIP C-terminal domain	F: E3_UbLigase_RBR	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01790	Prolipoprotein diacylglyceryl transferase (LGT)	Prolipoprotein diacylglyceryl transferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Prolipoprotein diacylglyceryl transferase	glycosyltransferase activity catalytic activity, acting on a protein phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity transferase activity catalytic activity	biosynthetic process lipoprotein biosynthetic process lipoprotein metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process protein metabolic process macromolecule biosynthetic process	cell periphery cellular anatomical structure plasma membrane membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001640	Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Diacylglyceryl Transferases	Phosphatidylglycerol:prolipoprotein diacylglyceryl transferase (Lgt) in complex with phosphatidylglycerol

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.