5BKL | pdb_00005bkl

Crystallographic structure of the cubic crystal form of STMV (77.9 degree rotation) grown from NaCl

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
FA [auth KK]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
EA [auth JJ]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
DA [auth II]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
CA [auth HH]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
BA [auth GG]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	Utp13	e5bklO1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
N	Utp13	e5bklN1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
M	Utp13	e5bklM1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
L	Utp13	e5bklL1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
K	Utp13	e5bklK1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
J	Utp13	e5bklJ1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
I	Utp13	e5bklI1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
H	Utp13	e5bklH1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
G	Utp13	e5bklG1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
FA [auth KK]	Utp13	e5bklKK1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
F	Utp13	e5bklF1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
EA [auth JJ]	Utp13	e5bklJJ1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
E	Utp13	e5bklE1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
DA [auth II]	Utp13	e5bklII1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
D	Utp13	e5bklD1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
CA [auth HH]	Utp13	e5bklHH1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
C	Utp13	e5bklC1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
BA [auth GG]	Utp13	e5bklGG1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
B	Utp13	e5bklB1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)
A	Utp13	e5bklA1	A: beta barrels	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Utp13	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Z [auth m]	RNA (5'-R(UPUPUPUPUPUPUPUPUPUPU)-3')	-	-	-
AA [auth n], IA [auth WW], KA [auth kk], LA [auth ll], MA [auth qq], AA [auth n], IA [auth WW], KA [auth kk], LA [auth ll], MA [auth qq], W [auth e], X [auth h], Y [auth i]	RNA (5'-R(UPUPUPUPUPUPUPUPUPUPUPUP*U)-3')	-	-	-
GA [auth TT], U [auth Y], V [auth a]	RNA (5'-R(APAPAPAPAPAPAPAPAPAP*A)-3')	-	-	-
HA [auth UU], JA [auth bb], P, Q [auth S], R [auth T], HA [auth UU], JA [auth bb], P, Q [auth S], R [auth T], S [auth V], T [auth X]	RNA (5'-R(APAPAPAPAPAPAPAPAPAPAPA)-3')	-	-	-
A, B, BA [auth GG], C, CA [auth HH], A, B, BA [auth GG], C, CA [auth HH], D, DA [auth II], E, EA [auth JJ], F, FA [auth KK], G, H, I, J, K, L, M, N, O	Coat protein	structural molecule activity	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, BA [auth GG], C, CA [auth HH], A, B, BA [auth GG], C, CA [auth HH], D, DA [auth II], E, EA [auth JJ], F, FA [auth KK], G, H, I, J, K, L, M, N, O	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.