5BW0 | pdb_00005bw0

The crystal structure of minor pseudopilin binary complex of XcpV and XcpW from the Type 2 secretion system of Pseudomonas aeruginosa

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G	d5bw0g_	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	automated matches	automated matches	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
E	d5bw0e_	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	automated matches	automated matches	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
C	d5bw0c1	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	automated matches	automated matches	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d5bw0a_	Alpha and beta proteins (a+b)	Pili subunits	Pili subunits	automated matches	automated matches	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Pili subunits	8086738	3000097	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Pili subunits	8086738	3000097	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Pili subunits	8086738	3000097	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Pili subunits	8086738	3000097	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H		e5bw0H1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F:	ECOD (develop294)
F	RA_2	e5bw0F1	A: alpha bundles	X: Rossmann-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: RA_2	ECOD (develop294)
D		e5bw0D1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F:	ECOD (develop294)
B		e5bw0B1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F:	ECOD (develop294)
G	ubiquitin	e5bw0G1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F: ubiquitin	ECOD (develop294)
E	ubiquitin	e5bw0E1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F: ubiquitin	ECOD (develop294)
C	ubiquitin	e5bw0C1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F: ubiquitin	ECOD (develop294)
A	ubiquitin	e5bw0A1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F: ubiquitin	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.30.1300.30	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
F	3.30.1300.30	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
D	3.30.1300.30	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)
B	3.30.1300.30	Alpha Beta	2-Layer Sandwich	Pantoate--beta-alanine Ligase	Chain: A,domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H	PF02501	Type II secretion system (T2SS), protein I (T2SSI)	Type II secretion system (T2SS), protein I	The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. As me ...	The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. As members of the T2SJ family, members of the T2SI family are pseudopilins containing prepilin signal sequences [1].	Domain
A, C, E, G	PF11612	Type II secretion system (T2SS), protein J (T2SSJ)	Type II secretion system (T2SS), protein J	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	Type II secretion system protein I	-	protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex type II protein secretion system complex
A, C, E, G	Type II secretion system protein J	-	protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex type II protein secretion system complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR003413	Type II secretion system protein GspI, C-terminal	Domain
B, D, F, H	IPR012902	Prokaryotic N-terminal methylation site	PTM
B, D, F, H	IPR010052	Type II secretion system protein GspI	Family
B, D, F, H	IPR045584	Pilin-like	Homologous Superfamily
A, C, E, G	IPR010055	Type II secretion system protein GspJ	Family
A, C, E, G	IPR012902	Prokaryotic N-terminal methylation site	PTM
A, C, E, G	IPR051621	Type II secretion system protein J	Family
A, C, E, G	IPR045584	Pilin-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.