5BWK | pdb_00005bwk

6.0 A Crystal structure of a Get3-Get4-Get5 intermediate complex from S.cerevisiae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
W [auth X]	SCOP2B Superfamily	GET5 GET4-binding region-like	8090909	3002469	SCOP2B (2022-06-29)
U [auth V]	SCOP2B Superfamily	GET5 GET4-binding region-like	8090909	3002469	SCOP2B (2022-06-29)
S [auth T]	SCOP2B Superfamily	GET5 GET4-binding region-like	8090909	3002469	SCOP2B (2022-06-29)
Q [auth R]	SCOP2B Superfamily	GET5 GET4-binding region-like	8090909	3002469	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	GET5 GET4-binding region-like	8090909	3002469	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	GET5 GET4-binding region-like	8090909	3002469	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	GET5 GET4-binding region-like	8090909	3002469	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	GET5 GET4-binding region-like	8090909	3002469	SCOP2B (2022-06-29)
V [auth W]	SCOP2B Superfamily	TPR-like	8090908	3001345	SCOP2B (2022-06-29)
T [auth U]	SCOP2B Superfamily	TPR-like	8090908	3001345	SCOP2B (2022-06-29)
R [auth S]	SCOP2B Superfamily	TPR-like	8090908	3001345	SCOP2B (2022-06-29)
P [auth Q]	SCOP2B Superfamily	TPR-like	8090908	3001345	SCOP2B (2022-06-29)
J [auth K]	SCOP2B Superfamily	TPR-like	8090908	3001345	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	TPR-like	8090908	3001345	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	TPR-like	8090908	3001345	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	TPR-like	8090908	3001345	SCOP2B (2022-06-29)
X [auth C]	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
O [auth P]	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
N [auth O]	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
M [auth N]	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
L [auth M]	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Simibi-like P-loop NTPases	8017940	3002018	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V [auth W]	e5bwkW1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
T [auth U]	e5bwkU1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
R [auth S]	e5bwkS1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
P [auth Q]	e5bwkQ1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
J [auth K]	e5bwkK1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
H [auth I]	e5bwkI1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
F [auth G]	e5bwkG1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
D [auth E]	e5bwkE1	A: C-terminal additional helical subdomain in reovirus polymerase lambda3	X: C-terminal additional helical subdomain in reovirus polymerase lambda3	H: C-terminal additional helical subdomain in reovirus polymerase lambda3	T: HrpJ	F:	ECOD (20:10:01)
X [auth C]	e5bwkC1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
O [auth P]	e5bwkP1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
N [auth O]	e5bwkO1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
M [auth N]	e5bwkN1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
L [auth M]	e5bwkM1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
C [auth D]	e5bwkD1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
B	e5bwkB1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)
A	e5bwkA1	A: beta-propeller-like	X: beta-Prism II	H: beta-Prism II	T: GET4	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], S [auth T], U [auth V], W [auth X]	PF16843	Binding domain to Get4 on Get5, Golgi to ER traffic protein (Get5_bdg)	Binding domain to Get4 on Get5, Golgi to ER traffic protein	Get5_bdg is the binding domain at the N-terminus of Get5, or Golgi to ER traffic protein 5, in yeast, that binds to Get4. Together with Get3, this tripartite complex is involved in the insertion of tail-anchored proteins in the ER membrane [1].	Domain
D [auth E], F [auth G], H [auth I], J [auth K], P [auth Q], D [auth E], F [auth G], H [auth I], J [auth K], P [auth Q], R [auth S], T [auth U], V [auth W]	PF04190	Golgi to ER traffic protein 4 (GET4)	Golgi to ER traffic protein 4	-	Repeat
A, B, C [auth D], L [auth M], M [auth N], A, B, C [auth D], L [auth M], M [auth N], N [auth O], O [auth P], X [auth C]	PF02374	Anion-transporting ATPase (ArsA_ATPase)	Anion-transporting ATPase	This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], S [auth T], U [auth V], W [auth X]	Ubiquitin-like protein MDY2	protein-macromolecule adaptor activity molecular adaptor activity	developmental process anatomical structure morphogenesis sexual reproduction reproductive process anatomical structure development cell morphogenesis involved in conjugation with cellular fusion cell morphogenesis conjugation with cellular fusion membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization developmental process anatomical structure morphogenesis sexual reproduction reproductive process anatomical structure development cell morphogenesis involved in conjugation with cellular fusion cell morphogenesis conjugation with cellular fusion membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization protein targeting post-translational protein targeting to endoplasmic reticulum membrane protein targeting to membrane establishment of protein localization to organelle establishment of protein localization to endoplasmic reticulum protein targeting to ER	intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cytosol protein-containing complex TRC complex intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cytosol protein-containing complex TRC complex ER membrane insertion complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D [auth E], F [auth G], H [auth I], J [auth K], P [auth Q], D [auth E], F [auth G], H [auth I], J [auth K], P [auth Q], R [auth S], T [auth U], V [auth W]	Golgi to ER traffic protein 4	-	membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization transport vesicle-mediated transport protein targeting post-translational protein targeting to endoplasmic reticulum membrane protein targeting to membrane establishment of protein localization to organelle establishment of protein localization to endoplasmic reticulum protein targeting to ER	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex TRC complex ER membrane insertion complex
A, B, C [auth D], L [auth M], M [auth N], A, B, C [auth D], L [auth M], M [auth N], N [auth O], O [auth P], X [auth C]	ATPase GET3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity protein folding chaperone cation binding metal ion binding identical protein binding	membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization tail-anchored membrane protein insertion into ER membrane protein targeting post-translational protein targeting to endoplasmic reticulum membrane protein targeting to membrane establishment of protein localization to organelle establishment of protein localization to endoplasmic reticulum protein targeting to ER response to stimulus response to metal ion response to chemical cellular response to stimulus response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Golgi vesicle transport vesicle-mediated transport regulation of cellular process sexual reproduction signaling regulation of reproductive process reproductive process positive regulation of biological process regulation of conjugation with cellular fusion response to pheromone cellular response to pheromone cell communication positive regulation of conjugation with cellular fusion signal transduction positive regulation of reproductive process pheromone-dependent signal transduction involved in conjugation with cellular fusion regulation of biological process signal transduction involved in positive regulation of conjugation with cellular fusion biological regulation conjugation with cellular fusion response to pheromone triggering conjugation with cellular fusion response to heat response to abiotic stimulus response to temperature stimulus response to arsenic-containing substance	membrane-bounded organelle protein-containing complex intracellular anatomical structure intracellular membrane-bounded organelle endomembrane system GET complex intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm endoplasmic reticulum protein-containing complex cytosol organelle subcompartment membrane-bounded organelle protein-containing complex intracellular anatomical structure intracellular membrane-bounded organelle endomembrane system GET complex intracellular organelle cellular anatomical structure organelle endoplasmic reticulum cytoplasm endoplasmic reticulum protein-containing complex cytosol organelle subcompartment membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane endoplasmic reticulum membrane Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], S [auth T], U [auth V], W [auth X]	IPR031765	Mdy2, Get4 binding domain	Domain
E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], S [auth T], U [auth V], W [auth X]	IPR000626	Ubiquitin-like domain	Domain
E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], S [auth T], U [auth V], W [auth X]	IPR040474	Ubiquitin-like protein MDY2, C-terminal domain	Domain
E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], S [auth T], U [auth V], W [auth X]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], E [auth F], G [auth H], I [auth J], K [auth L], Q [auth R], S [auth T], U [auth V], W [auth X]	IPR047154	Ubiquitin-like protein 4A-like	Family
D [auth E], F [auth G], H [auth I], J [auth K], P [auth Q], D [auth E], F [auth G], H [auth I], J [auth K], P [auth Q], R [auth S], T [auth U], V [auth W]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
D [auth E], F [auth G], H [auth I], J [auth K], P [auth Q], D [auth E], F [auth G], H [auth I], J [auth K], P [auth Q], R [auth S], T [auth U], V [auth W]	IPR007317	Golgi to ER traffic protein 4	Family
A, B, C [auth D], L [auth M], M [auth N], A, B, C [auth D], L [auth M], M [auth N], N [auth O], O [auth P], X [auth C]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C [auth D], L [auth M], M [auth N], A, B, C [auth D], L [auth M], M [auth N], N [auth O], O [auth P], X [auth C]	IPR027542	Arsenical pump ATPase, ArsA/GET3, eukaryotic	Family
A, B, C [auth D], L [auth M], M [auth N], A, B, C [auth D], L [auth M], M [auth N], N [auth O], O [auth P], X [auth C]	IPR016300	Arsenical pump ATPase, ArsA/GET3	Family
A, B, C [auth D], L [auth M], M [auth N], A, B, C [auth D], L [auth M], M [auth N], N [auth O], O [auth P], X [auth C]	IPR025723	ArsA/GET3, Anion-transporting ATPase-like domain	Domain