5CQ9 | pdb_00005cq9

Crystal structure of SopD2, a type III secreted virulence effector from Salmonella enterica

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyT3SS effector SopD-like 8091425 3002509 SCOP2B (2022-06-29)
ASCOP2 FamilyT3SS effector SopD-like 8045847 4004722 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyT3SS effector SopD-like 8091425 3002509 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BFumblee5cq9B1 A: alpha bundlesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: FumbleECOD (develop294)
ASopDe5cq9A1 A: alpha bundlesX: SopD C-terminal domainH: SopD C-terminal domainT: SopD C-terminal domainF: SopDECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, D
11-mer peptide---
A, B
Secreted effector protein sopD2-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR022747Salmonella outer protein DFamily