5D9D | pdb_00005d9d

Luciferin-regenerating enzyme solved by SAD using synchrotron radiation at room temperature

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5d9da_	All beta proteins	6-bladed beta-propeller	Calcium-dependent phosphotriesterase	automated matches	automated matches	Common eastern firefly (Photinus pyralis ) [TaxId: 7054 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Calcium-dependent phosphotriesterase	8086690	3000504	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Piezo_RRas_bdg	e5d9dA1	A: alpha bundles	X: Cysteine proteinases-like	H: Piezo CTL2 domain	T: Piezo CTL2 domain	F: Piezo_RRas_bdg	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.120.10.30	Mainly Beta	6 Propeller	Neuraminidase	TolB, C-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Luciferin regenerating enzyme	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity gluconolactonase activity catalytic activity	monosaccharide metabolic process carbohydrate metabolic process water-soluble vitamin biosynthetic process small molecule biosynthetic process oxoacid metabolic process carbohydrate biosynthetic process carboxylic acid metabolic process vitamin biosynthetic process monosaccharide biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process vitamin metabolic process L-ascorbic acid metabolic process monosaccharide metabolic process carbohydrate metabolic process water-soluble vitamin biosynthetic process small molecule biosynthetic process oxoacid metabolic process carbohydrate biosynthetic process carboxylic acid metabolic process vitamin biosynthetic process monosaccharide biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process vitamin metabolic process L-ascorbic acid metabolic process biosynthetic process lactone metabolic process lactone biosynthetic process small molecule metabolic process metabolic process cellular process L-ascorbic acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
A	IPR013658	SMP-30/Gluconolactonase/LRE-like region	Domain
A	IPR005511	Senescence marker protein-30 (SMP-30)	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.