5FQ6 | pdb_00005fq6

Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
N	SCOP2B Superfamily	BT_2261-like	8106401	3002850	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	BT_2261-like	8106401	3002850	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	BT_2261-like	8106401	3002850	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	BT_2261-like	8106401	3002850	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N		e5fq6N1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
J		e5fq6J1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
F		e5fq6F1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
E		e5fq6E1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
M		e5fq6M1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_int_SAM_6	F:	ECOD (20:10:01)
I		e5fq6I1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_int_SAM_6	F:	ECOD (20:10:01)
D		e5fq6D1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_int_SAM_6	F:	ECOD (20:10:01)
B		e5fq6B1	A: jelly-roll	X: AOC barrel-like	H: AOC barrel-like	T:	F:	ECOD (20:10:01)
L		e5fq6L1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
H		e5fq6H1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
C		e5fq6C1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
A		e5fq6A1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
N	2.40.128.220	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
J	2.40.128.220	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
F	2.40.128.220	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
E	2.40.128.220	Mainly Beta	Beta Barrel	Lipocalin		CATH (4.3.0)
L	1.25.40.390	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
H	1.25.40.390	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
C	1.25.40.390	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
A	1.25.40.390	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E, F, J, N	PF12888	Lipid-binding putative hydrolase (Lipid_bd)	Lipid-binding putative hydrolase	-	Family
A, C, H, L	PF12771	Starch-binding associating with outer membrane (SusD-like_2)	Starch-binding associating with outer membrane	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, K, O, P	BT_2261	-	-	-
E, F, J, N	UNCHARACTERIZED PROTEIN	-	-	-
B, D, I, M	SUSC/RAGA FAMILY TONB-LINKED OUTER MEMBRANE PROTEIN	cation binding ion binding binding metal ion binding small molecule binding	-	cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane
A, C, H, L	PUTATIVE LIPOPROTEIN	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, J, N	IPR024404	Lipid-binding, putative	Family
E, F, J, N	IPR038668	Lipid-binding superfamily	Homologous Superfamily
B, D, I, M	IPR039426	TonB-dependent receptor-like	Family
B, D, I, M	IPR037066	TonB-dependent receptor, plug domain superfamily	Homologous Superfamily
B, D, I, M	IPR036942	TonB-dependent receptor-like, beta-barrel domain superfamily	Homologous Superfamily
B, D, I, M	IPR023997	TonB-dependent outer membrane protein SusC/RagA, conserved site	Conserved Site
B, D, I, M	IPR023996	TonB-dependent outer membrane protein, SusC/RagA	Family
B, D, I, M	IPR012910	TonB-dependent receptor, plug domain	Domain
A, C, H, L	IPR041662	SusD-like 2	Family
A, C, H, L	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, H, I, J, L, M, N	OPM	Transmembrane	Beta-barrel transmembrane	Ligand-gated protein channels (n=22,S=24)	Outer Membrane Receptor (OMR)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, H, I, J, L, M, N	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, H, I, J, L, M, N	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, H, I, J, L, M, N	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Polysaccharide Utilization Proteins	SusCD complex BT2261-2264, space group P1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.