5JVT | pdb_00005jvt

Crystal structure of the DNA binding domain of transcription factor FLI1 in complex with an 11-mer DNA GACCGGAAGTG

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8003108	3000034	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Winged helix DNA-binding domain	8003108	3000034	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Winged helix DNA-binding domain	8003108	3000034	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PK_Tyr_Ser-Thr	e5jvtA1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PK_Tyr_Ser-Thr	ECOD (develop294)
D	PK_Tyr_Ser-Thr	e5jvtD1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PK_Tyr_Ser-Thr	ECOD (develop294)
G	PK_Tyr_Ser-Thr	e5jvtG1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PK_Tyr_Ser-Thr	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
D	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
G	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, G	PF00178	Ets-domain (Ets)	Ets-domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, G	Friend leukemia integration 1 transcription factor	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	developmental process cellular developmental process cell differentiation cellular process regulation of body fluid levels hemostasis biological regulation regulation of biological quality hemopoiesis megakaryocyte differentiation cell development myeloid cell differentiation megakaryocyte development anatomical structure development developmental process cellular developmental process cell differentiation cellular process regulation of body fluid levels hemostasis biological regulation regulation of biological quality hemopoiesis megakaryocyte differentiation cell development myeloid cell differentiation megakaryocyte development anatomical structure development myeloid cell development anatomical structure morphogenesis animal organ development animal organ morphogenesis regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II multicellular organismal process system process circulatory system process blood circulation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome nuclear body
B, E, H	DNA (5'-D(GPAPCPCPGPGPAPAPGPTP*G)-3')	-	-	-
C, F, I	DNA (5'-D(CPAPCPTPTPCPCPGPGPTP*C)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, G	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A, D, G	IPR035573	Friend leukemia integration 1 transcription factor, pointed domain	Domain
A, D, G	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, D, G	IPR000418	Ets domain	Domain
A, D, G	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, D, G	IPR046328	ETS family	Family
A, D, G	IPR003118	Pointed domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, D, G	Pharos: Q01543	Ewing sarcoma medulloblastoma bleeding disorder, platelet-type, 21 Jacobsen syndrome adult medulloblastoma medullomyoblastoma with myogenic differentiation melanotic medulloblastoma Paris-Trousseau thrombocytopenia childhood medulloblastoma Liver Cirrhosis, Experimental neoplasm of mature B-cells osteosarcoma pancreatic intraductal papillary-mucinous neoplasm peripheral primitive neuroectodermal tumor platelet storage pool deficiency Ewing sarcoma medulloblastoma bleeding disorder, platelet-type, 21 Jacobsen syndrome adult medulloblastoma medullomyoblastoma with myogenic differentiation melanotic medulloblastoma Paris-Trousseau thrombocytopenia childhood medulloblastoma Liver Cirrhosis, Experimental neoplasm of mature B-cells osteosarcoma pancreatic intraductal papillary-mucinous neoplasm peripheral primitive neuroectodermal tumor platelet storage pool deficiency cutaneous lupus erythematosus systemic lupus erythematosus vitiligo interstitial cystitis lung adenocarcinoma lymphoplasmacytic lymphoma nephrosclerosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atrial fibrillation pilocytic astrocytoma cancer rheumatoid arthritis cystic fibrosis tuberculosis extraskeletal Ewing sarcoma lung cancer malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma B-cell chronic lymphocytic leukemia plasma cell myeloma Sjogren syndrome desmoplastic/nodular medulloblastoma ulcerative colitis Hermansky-Pudlak syndrome 1 lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.