5K7Z | pdb_00005k7z

Crystal structure of AibR in complex with isovaleryl coenzyme A and operator DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TetR C-terminal domain-like	8088257	3000086	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Homeodomain-like	8087298	3000001	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Homeodomain-like	8087298	3000001	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TetR C-terminal domain-like	8088257	3000086	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TetR C-terminal domain-like	8088257	3000086	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Homeodomain-like	8087298	3000001	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TetR C-terminal domain-like	8088257	3000086	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Homeodomain-like	8087298	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TP_methylase	e5k7zA1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: TP_methylase	ECOD (develop294)
D	TP_methylase	e5k7zD1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: TP_methylase	ECOD (develop294)
C	TP_methylase	e5k7zC1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: TP_methylase	ECOD (develop294)
B	TP_methylase	e5k7zB1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: TP_methylase	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)
A	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
D	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)
D	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
C	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)
C	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
B	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)
B	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21351	Tetracyclin repressor-like, C-terminal domain (TetR_C_41)	Tetracyclin repressor-like, C-terminal domain	This domain is found at the C-terminal end of transcriptional regulators of the TetR family, including Swiss:O53623 from Mycobacterium tuberculosis and Swiss:Q1D4I5 from Myxococcus xanthus. This is the all-helical ligand-binding domain, which interac ...	This domain is found at the C-terminal end of transcriptional regulators of the TetR family, including Swiss:O53623 from Mycobacterium tuberculosis and Swiss:Q1D4I5 from Myxococcus xanthus. This is the all-helical ligand-binding domain, which interacts with the respective effector molecule and transmits the signal to the DNA binding domain (Pfam:PF00440).	Domain
A, B, C, D	PF00440	Bacterial regulatory proteins, tetR family (TetR_N)	Bacterial regulatory proteins, tetR family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F	DNA (32-MER)	-	-	-
A, B, C, D	Transcriptional regulator, TetR family	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, B, C, D	IPR050109	HTH-type, TetR-like transcriptional regulator	Family
A, B, C, D	IPR001647	DNA-binding HTH domain, TetR-type	Domain
A, B, C, D	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR041490	HTH-type transcriptional repressor KstR2, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.