5LSU | pdb_00005lsu

Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5lsub_ Membrane and cell surface proteins and peptides SNF-like SNF-like Amino acid antiporter-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad5lsua_ Membrane and cell surface proteins and peptides SNF-like SNF-like Amino acid antiporter-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Be5lsuB1 A: cradle loop barrelX: RIFT-relatedH: Alanine racemase-CT: GTP_EFTU_D2F:ECOD (20:10:01)
Ae5lsuA1 A: cradle loop barrelX: RIFT-relatedH: Alanine racemase-CT: GTP_EFTU_D2F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00856SET domain (SET)SET domain- Family
A, B
PF17907AWS domain (AWS)AWS domainThis entry represents the AWS (associated with SET domain) domain [1]. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET ...This entry represents the AWS (associated with SET domain) domain [1]. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET domain.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Histone-lysine N-methyltransferase NSD2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001965Zinc finger, PHD-typeDomain
A, B
IPR046341SET domain superfamilyHomologous Superfamily
A, B
IPR047441Nuclear SET domain-containing protein 2, third PHD fingerDomain
A, B
IPR001214SET domainDomain
A, B
IPR000313PWWP domainDomain
A, B
IPR047426Histone-lysine N-methyltransferase NSD1 / NSD2, first PHD fingerDomain
A, B
IPR047442Nuclear SET domain-containing protein 2, fifth PHD fingerDomain
A, B
IPR003616Post-SET domainDomain
A, B
IPR055198Histone-lysine N-methyltransferase NSD-like, PHD zinc fingerDomain
A, B
IPR047434Nuclear SET domain-containing protein 2, first PWWP domainDomain
A, B
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
A, B
IPR059153Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1Domain
A, B
IPR001841Zinc finger, RING-typeDomain
A, B
IPR036910High mobility group box domain superfamilyHomologous Superfamily
A, B
IPR006560AWS domainDomain
A, B
IPR055197Histone-lysine N-methyltransferase NSD-like, variant PHD zinc fingerDomain
A, B
IPR041306NSD, Cys-His rich domainDomain
A, B
IPR050777SET2 Histone-Lysine N-MethyltransferaseFamily
A, B
IPR019787Zinc finger, PHD-fingerDomain
A, B
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
A, B
IPR019786Zinc finger, PHD-type, conserved siteConserved Site
A, B
IPR047443Nuclear SET domain-containing protein 2, HMG boxDomain
A, B
IPR047437Nuclear SET domain-containing protein 2, SET domainDomain
A, B
IPR047439Nuclear SET domain-containing protein 2, second PHD fingerDomain
A, B
IPR047435Nuclear SET domain-containing protein 2, second PWWP domainDomain
A, B
IPR009071High mobility group box domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
Pharos:  O96028