5LTP | pdb_00005ltp

Structure of the Yellow-Green Fluorescent Protein mNeonGreen from Branchiostoma lanceolatum at the acidic pH 4.5

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5ltpa_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
C	d5ltpc1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
C	d5ltpc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
D	d5ltpd1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
D	d5ltpd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
F	d5ltpf1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
F	d5ltpf2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
E	d5ltpe1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
E	d5ltpe2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
B	d5ltpb1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)
B	d5ltpb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Branchiostoma lanceolatum ) [TaxId: 7740 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	GFP-like	8096556	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8096556	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8096556	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8096556	3000576	SCOP2B (2022-06-29)
B	SCOP2 Family	Fluorescent proteins	8096555	4001049	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	GFP-like	8096556	3000576	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5ltpA1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
C		e5ltpC1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
D		e5ltpD1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
F		e5ltpF1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
E		e5ltpE1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)
B		e5ltpB1	A: F-type ATP synthase subunit b	X: Bacterial cell wall synthesis membrane enzyme MraY-related	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Phage_integrase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	mNeonGreen	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F	IPR009017	Green fluorescent protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.