Structure of nanobody nb18 raised against TssK from E. coli T6SS
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d5m2wa1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
| A | d5m2wa2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | Llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
| B | d5m2wb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
| B | d5m2wb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | Llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | e5m2wA1 | A: Four-helical up-and-down bundle | X: Immunoglobulin-related | H: Common fold of diphtheria toxin/transcription factors/cytochrome f | T: PDH_N | F: | ECOD (20:10:01) | |
| B | e5m2wB1 | A: Four-helical up-and-down bundle | X: Immunoglobulin-related | H: Common fold of diphtheria toxin/transcription factors/cytochrome f | T: PDH_N | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
