5M59 | pdb_00005m59

Crystal structure of Chaetomium thermophilum Brr2 helicase core in complex with Prp8 Jab1 domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth H]	SasG_E	e5m59H1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: SasG_E	ECOD (develop294)
E [auth F]	SasG_E	e5m59F1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: SasG_E	ECOD (develop294)
C [auth D]	SasG_E	e5m59D1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: SasG_E	ECOD (develop294)
A [auth B]	SasG_E	e5m59B1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: SasG_E	ECOD (develop294)
H [auth G]	SasG_E	e5m59G1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: SasG_E	ECOD (develop294)
F [auth E]	SasG_E	e5m59E1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: SasG_E	ECOD (develop294)
D [auth C]	SasG_E	e5m59C1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: SasG_E	ECOD (develop294)
B [auth A]	SasG_E	e5m59A1	A: alpha bundles	X: Tetrapyrrole methylase C-terminal domain-like	H: Tetrapyrrole methylase C-terminal domain	T: Tetrapyrrole methylase C-terminal domain	F: SasG_E	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth H]	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
E [auth F]	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
C [auth D]	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
A [auth B]	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
D [auth C]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
B [auth A]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B [auth A]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
B [auth A]	1.10.3380.10	Mainly Alpha	Orthogonal Bundle	Sec63 N-terminal domain-like fold	Sec63 N-terminal domain-like domain	CATH (4.3.0)
B [auth A]	1.10.150.20	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
B [auth A]	2.60.40.150	Mainly Beta	Sandwich	Immunoglobulin-like	C2 domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], C [auth D], E [auth F], G [auth H]	PF08084	PROCT (NUC072) domain (PROCT)	PROCT (NUC072) domain	The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1].	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	PF02889	Sec63 Brl domain (Sec63)	Sec63 Brl domain	-	Family
B [auth A], D [auth C], F [auth E], H [auth G]	PF23445	Winged Helix-turn-helix domain (WHD_SNRNP200)	Winged Helix-turn-helix domain	This entry represents a winged Helix-Turn-Helix domain found in a variety of helicase enzymes.	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	PF00270	DEAD/DEAH box helicase (DEAD)	DEAD/DEAH box helicase	Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...	Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	PF00271	Helicase conserved C-terminal domain (Helicase_C)	Helicase conserved C-terminal domain	The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], C [auth D], E [auth F], G [auth H]	Putative pre-mRNA splicing factor	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity RNA binding snRNA binding binding nucleic acid binding U1 snRNA binding U6 snRNA binding U5 snRNA binding U2 snRNA binding pre-mRNA binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity RNA binding snRNA binding binding nucleic acid binding U1 snRNA binding U6 snRNA binding U5 snRNA binding U2 snRNA binding pre-mRNA binding pre-mRNA intronic binding	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA splicing, via transesterification reactions mRNA cis splicing, via spliceosome RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA splicing, via transesterification reactions mRNA cis splicing, via spliceosome mRNA splicing, via spliceosome metabolic process cellular process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process RNA processing ribonucleoprotein complex biogenesis spliceosomal tri-snRNP complex assembly protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization spliceosomal snRNP assembly spliceosomal conformational changes to generate catalytic conformation	membrane-bounded organelle catalytic step 2 spliceosome protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex Prp19 complex membrane-bounded organelle catalytic step 2 spliceosome protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex Prp19 complex U5 snRNP spliceosomal snRNP complex Sm-like protein family complex small nuclear ribonucleoprotein complex
B [auth A], D [auth C], F [auth E], H [auth G]	Pre-mRNA splicing helicase-like protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleic acid binding hydrolase activity catalytic activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity ATP-dependent activity, acting on DNA DNA helicase activity catalytic activity, acting on DNA cation binding metal ion binding	ribonucleoprotein complex biogenesis RNA metabolic process mRNA processing protein-RNA complex assembly cellular component organization cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis RNA processing ribonucleoprotein complex biogenesis RNA metabolic process mRNA processing protein-RNA complex assembly cellular component organization cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis RNA processing RNA splicing protein-containing complex organization spliceosomal conformational changes to generate catalytic conformation primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome cellular process metabolic process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process sexual reproduction homologous recombination reproductive process resolution of meiotic recombination intermediates meiotic cell cycle process meiosis I meiotic nuclear division cell cycle reciprocal homologous recombination cell cycle process meiotic cell cycle DNA recombination organelle fission DNA metabolic process reciprocal meiotic recombination nuclear division organelle organization meiosis I cell cycle process	U5 snRNP membrane-bounded organelle spliceosomal snRNP complex protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex Sm-like protein family complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure small nuclear ribonucleoprotein complex organelle ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], C [auth D], E [auth F], G [auth H]	IPR012984	PROCT domain	Domain
A [auth B], C [auth D], E [auth F], G [auth H]	IPR012591	PRO8NT domain	Domain
A [auth B], C [auth D], E [auth F], G [auth H]	IPR019580	Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding	Domain
A [auth B], C [auth D], E [auth F], G [auth H]	IPR027652	Pre-mRNA-processing-splicing factor 8	Family
A [auth B], C [auth D], E [auth F], G [auth H]	IPR043172	Prp8 RNase domain IV, palm region	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth H]	IPR012592	PROCN domain	Domain
A [auth B], C [auth D], E [auth F], G [auth H]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth H]	IPR043173	Prp8 RNase domain IV, fingers region	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth H]	IPR021983	PRP8 domain IV core	Domain
A [auth B], C [auth D], E [auth F], G [auth H]	IPR019581	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding	Domain
A [auth B], C [auth D], E [auth F], G [auth H]	IPR037518	MPN domain	Domain
A [auth B], C [auth D], E [auth F], G [auth H]	IPR019582	RNA recognition motif, spliceosomal PrP8	Domain
A [auth B], C [auth D], E [auth F], G [auth H]	IPR042516	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth H]	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR050474	Helicase Hel308/SKI2-like	Family
B [auth A], D [auth C], F [auth E], H [auth G]	IPR001650	Helicase, C-terminal domain-like	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
B [auth A], D [auth C], F [auth E], H [auth G]	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
B [auth A], D [auth C], F [auth E], H [auth G]	IPR048863	Pre-mRNA-splicing helicase BRR2-like, plug domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR041094	Brr2, N-terminal helicase PWI domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR004179	Sec63 domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR035892	C2 domain superfamily	Homologous Superfamily
B [auth A], D [auth C], F [auth E], H [auth G]	IPR003593	AAA+ ATPase domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B [auth A], D [auth C], F [auth E], H [auth G]	IPR011545	DEAD/DEAH-box helicase domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR057842	MER3 helicase-like, winged helix domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily