5M5P | pdb_00005m5p

S. cerevisiae spliceosomal helicase Brr2 (271-end) in complex with the Jab/MPN domain of S. cerevisiae Prp8


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyJAB1/MPN domain-like 8053281 3001105 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyJAB1/MPN domain-like 8053281 3001105 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhage_int_SAM_6e5m5pA1 A: alpha bundlesX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: Phage_int_SAM_6ECOD (develop294)
API3Kae5m5pA6 A: alpha bundlesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: PI3KaECOD (develop294)
CPhage_int_SAM_6e5m5pC1 A: alpha bundlesX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: Phage_int_SAM_6ECOD (develop294)
CPI3Kae5m5pC6 A: alpha bundlesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: PI3KaECOD (develop294)
BLectin_Ce5m5pB1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p)T: Ribosomal protein L29 (L29p)F: Lectin_CECOD (develop294)
DLectin_Ce5m5pD1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p)T: Ribosomal protein L29 (L29p)F: Lectin_CECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF02889Sec63 Brl domain (Sec63)Sec63 Brl domain- Family
A, C
PF23445Winged Helix-turn-helix domain (WHD_SNRNP200)Winged Helix-turn-helix domainThis entry represents a winged Helix-Turn-Helix domain found in a variety of helicase enzymes. Domain
A, C
PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
A, C
PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
A, C
PF18149N-terminal helicase PWI domain (Helicase_PWI)N-terminal helicase PWI domainThis domain is found in spliceosomal RNA helicase Brr2. Brr2 is required for the assembly of a catalytically active spliceosome on a messenger RNA precursor. The domain is found in the N-terminal region and is non-canonically PWI-like. The PWI-like d ...This domain is found in spliceosomal RNA helicase Brr2. Brr2 is required for the assembly of a catalytically active spliceosome on a messenger RNA precursor. The domain is found in the N-terminal region and is non-canonically PWI-like. The PWI-like domain is thought to be involved in protein-protein interactions [1].
Domain
B, D
PF08084PROCT (NUC072) domain (PROCT)PROCT (NUC072) domainThe PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
Pre-mRNA-splicing helicase BRR2
B, D
Pre-mRNA-splicing factor 8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C
IPR048863Pre-mRNA-splicing helicase BRR2-like, plug domainDomain
A, C
IPR041094Brr2, N-terminal helicase PWI domainDomain
A, C
IPR004179Sec63 domainDomain
A, C
IPR014756Immunoglobulin E-setHomologous Superfamily
A, C
IPR011545DEAD/DEAH-box helicase domainDomain
A, C
IPR057842MER3 helicase-like, winged helix domainDomain
A, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, C
IPR050474Helicase Hel308/SKI2-likeFamily
A, C
IPR001650Helicase, C-terminal domain-likeDomain
A, C
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, C
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
A, C
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A, C
IPR035892C2 domain superfamilyHomologous Superfamily
B, D
IPR012984PROCT domainDomain
B, D
IPR012591PRO8NT domainDomain
B, D
IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingDomain
B, D
IPR027652Pre-mRNA-processing-splicing factor 8Family
B, D
IPR043172Prp8 RNase domain IV, palm regionHomologous Superfamily
B, D
IPR012592PROCN domainDomain
B, D
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
B, D
IPR043173Prp8 RNase domain IV, fingers regionHomologous Superfamily
B, D
IPR021983PRP8 domain IV coreDomain
B, D
IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingDomain
B, D
IPR037518MPN domainDomain
B, D
IPR019582RNA recognition motif, spliceosomal PrP8Domain
B, D
IPR042516Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyHomologous Superfamily
B, D
IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain