5M94 | pdb_00005m94

Crystal structure of Staphylococcus capitis divalent metal ion transporter (DMT) in complex with nanobody


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
De5m94D1 A: F-type ATP synthase subunit bX: Bacterial cell wall synthesis membrane enzyme MraY-relatedH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Phage_integraseF:ECOD (20:10:01)
Be5m94B1 A: F-type ATP synthase subunit bX: Bacterial cell wall synthesis membrane enzyme MraY-relatedH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Phage_integraseF:ECOD (20:10:01)
Ce5m94C1 A: F-type ATP synthase subunit bX: Bacterial cell wall synthesis membrane enzyme MraY-relatedH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Phage_integraseF:ECOD (20:10:01)
Ae5m94A1 A: F-type ATP synthase subunit bX: Bacterial cell wall synthesis membrane enzyme MraY-relatedH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Phage_integraseF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B, D
nAb camelid VH Vicugna pacos (alpaca) IGHV3S53*01, IGHJ6*01 V-DOMAIN VH IG VH IMGT (202609-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B, D
Heavy ChainIGHV1 -divalent metal cation transporter mnthSAbDab (2026-03-13)