5N6N | pdb_00005n6n

CRYSTAL STRUCTURE OF THE 14-3-3:NEUTRAL TREHALASE NTH1 COMPLEX

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5n6nb_	All alpha proteins	alpha-alpha superhelix	14-3-3 protein	14-3-3 protein	automated matches	(Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
A	d5n6na_	All alpha proteins	alpha-alpha superhelix	14-3-3 protein	14-3-3 protein	automated matches	(Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	14-3-3 protein	8082825	3001329	SCOP2B (2022-06-29)
A	SCOP2 Family	14-3-3 protein	8082824	4001338	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	14-3-3 protein	8082825	3001329	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C		e5n6nC1	A: Regulatory factor Nef	X: Regulatory factor Nef	H: Lysozyme-like	T: PG_binding_1	F:	ECOD (20:10:01)
B		e5n6nB1	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T: Hydrolase	F:	ECOD (20:10:01)
A		e5n6nA1	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T: Hydrolase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)
A	1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF07492	Neutral trehalase Ca2+ binding domain (Trehalase_Ca-bi)	Neutral trehalase Ca2+ binding domain	Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in Swiss:O42893 have been implicated in this interacti ...	Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in Swiss:O42893 have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [1].	Domain
C	PF01204	Trehalase (Trehalase)	Trehalase	-	Repeat
A, B	PF00244	14-3-3 protein (14-3-3)	14-3-3 protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Neutral trehalase	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding hydrolase activity, acting on glycosyl bonds alpha,alpha-trehalase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity trehalase activity catalytic activity	carbohydrate metabolic process trehalose catabolic process catabolic process trehalose metabolic process oligosaccharide catabolic process oligosaccharide metabolic process carbohydrate catabolic process primary metabolic process disaccharide metabolic process metabolic process cellular process disaccharide catabolic process cellular response to stimulus cellular response to acid chemical carbohydrate metabolic process trehalose catabolic process catabolic process trehalose metabolic process oligosaccharide catabolic process oligosaccharide metabolic process carbohydrate catabolic process primary metabolic process disaccharide metabolic process metabolic process cellular process disaccharide catabolic process cellular response to stimulus cellular response to acid chemical response to stimulus cellular response to desiccation response to oxygen-containing compound cellular response to water deprivation response to water cellular response to oxygen-containing compound cellular response to environmental stimulus response to acid chemical cellular response to chemical stimulus cellular response to stress cellular response to water stimulus response to stress response to chemical response to abiotic stimulus cellular response to abiotic stimulus response to desiccation response to water deprivation	cellular anatomical structure intracellular anatomical structure cytoplasm
A, B	Protein BMH1	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA replication origin binding phosphoprotein binding protein binding phosphoserine residue binding protein phosphorylated amino acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA replication origin binding phosphoprotein binding protein binding phosphoserine residue binding protein phosphorylated amino acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity	cellular process cell cycle mitotic cell cycle pseudohyphal growth growth growth of unicellular organism as a thread of attached cells filamentous growth cell growth filamentous growth of a population of unicellular organisms regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation cellular process cell cycle mitotic cell cycle pseudohyphal growth growth growth of unicellular organism as a thread of attached cells filamentous growth cell growth filamentous growth of a population of unicellular organisms regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death negative regulation of post-translational protein modification regulation of protein modification process regulation of protein ubiquitination regulation of primary metabolic process protein ubiquitination negative regulation of protein modification process protein metabolic process negative regulation of protein ubiquitination regulation of protein modification by small protein conjugation or removal protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of protein modification by small protein conjugation or removal regulation of post-translational protein modification regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to stimulus signal transduction involved in filamentous growth response to stimulus signaling cell communication signal transduction regulation of cell cycle phase transition negative regulation of exit from mitosis spindle checkpoint signaling negative regulation of cell cycle cell cycle phase transition exit from mitosis intracellular signal transduction negative regulation of mitotic cell cycle cellular component organization regulation of mitotic cell cycle negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling cellular component organization or biogenesis regulation of cell cycle cell cycle process mitotic nuclear division negative regulation of mitotic cell cycle phase transition regulation of cell cycle process organelle fission negative regulation of cell cycle process mitotic spindle orientation checkpoint signaling cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling nuclear division organelle organization mitotic cell cycle process regulation of exit from mitosis mitotic cell cycle phase transition carbohydrate metabolic process energy derivation by oxidation of organic compounds glycogen metabolic process regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of polysaccharide metabolic process glucan metabolic process polysaccharide metabolic process energy reserve metabolic process regulation of glycogen metabolic process regulation of carbohydrate metabolic process small GTPase-mediated signal transduction Ras protein signal transduction intracellular signaling cassette cellular component biogenesis cellular component assembly aggresome assembly inclusion body assembly developmental process sexual sporulation resulting in formation of a cellular spore sexual reproduction cellular developmental process reproductive process reproductive process in single-celled organism meiotic cell cycle cell development developmental process involved in reproduction meiotic cell cycle process sporulation resulting in formation of a cellular spore anatomical structure morphogenesis ascospore formation sexual sporulation cell differentiation anatomical structure formation involved in morphogenesis anatomical structure development sporulation RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process DNA damage checkpoint signaling cellular response to stress response to stress DNA integrity checkpoint signaling DNA damage response signal transduction in response to DNA damage localization macromolecule localization intracellular protein localization amino sugar biosynthetic process carbohydrate derivative biosynthetic process chitin biosynthetic process carbohydrate derivative metabolic process chitin metabolic process glucosamine-containing compound biosynthetic process aminoglycan metabolic process amino sugar metabolic process aminoglycan biosynthetic process	intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cell periphery plasma membrane membrane intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule cell periphery plasma membrane membrane membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
C	IPR018232	Glycoside hydrolase, family 37, conserved site	Conserved Site
C	IPR001661	Glycoside hydrolase, family 37	Family
C	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
C	IPR011120	Neutral trehalase Ca2+ binding	Domain
A, B	IPR023409	14-3-3 protein, conserved site	Conserved Site
A, B	IPR023410	14-3-3 domain	Domain
A, B	IPR036815	14-3-3 domain superfamily	Homologous Superfamily
A, B	IPR000308	14-3-3 protein	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C	CAS	Parent Component: CYS
C	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046
A, B	CAS	Parent Component: CYS RESID: AA0037

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.