5XMD | pdb_00005xmd

Crystal structure of epoxide hydrolase VrEH1 from Vigna radiata

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	alpha/beta-Hydrolases	8097678	3000102	SCOP2B (2022-06-29)
B	SCOP2 Family	Epoxide hydrolase	8097677	4000716	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	alpha/beta-Hydrolases	8097678	3000102	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	alpha/beta-Hydrolases	8097678	3000102	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha/beta-Hydrolases	8097678	3000102	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5xmdA1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: V-set	F:	ECOD (20:10:01)
B		e5xmdB1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: VP4_haemagglut	F:	ECOD (20:10:01)
C		e5xmdC1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: VP4_haemagglut	F:	ECOD (20:10:01)
D		e5xmdD1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: VP4_haemagglut	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
B	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
C	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
D	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Epoxide hydrolase A	epoxide hydrolase activity ether hydrolase activity hydrolase activity, acting on ether bonds hydrolase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000639	Epoxide hydrolase-like	Family
A, B, C, D	IPR000073	Alpha/beta hydrolase fold-1	Domain
A, B, C, D	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.