5XTW | pdb_00005xtw

Crystal structure of the CysR-CTLD2 fragment of human MR at acidic pH

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H		e5xtwH1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: ATP-synt_VA_C	F:	ECOD (20:10:01)
G		e5xtwG1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: ATP-synt_VA_C	F:	ECOD (20:10:01)
F		e5xtwF1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: ATP-synt_VA_C	F:	ECOD (20:10:01)
E		e5xtwE1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: ATP-synt_VA_C	F:	ECOD (20:10:01)
D		e5xtwD1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: ATP-synt_VA_C	F:	ECOD (20:10:01)
C		e5xtwC1	A: Cryptochrome/photolyase FAD-binding domain-related	X: Cryptochrome/photolyase FAD-binding domain-related	H: Undecaprenyl diphosphate synthase	T:	F:	ECOD (20:10:01)
B		e5xtwB1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: ATP-synt_VA_C	F:	ECOD (20:10:01)
A		e5xtwA1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: ATP-synt_VA_C	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
H	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
G	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
G	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
F	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
F	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
E	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
E	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
D	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
D	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
C	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
C	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
B	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
A	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00040	Fibronectin type II domain (fn2)	Fibronectin type II domain		Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF24562	MRC2-like, N-terminal cysteine-rich domain (CysR_MRC2_N)	MRC2-like, N-terminal cysteine-rich domain	This cysteine-rich domain is found at the N-terminal end of human C-type mannose receptor 2 (MRC2) and similar proteins from vertebrates. MRC2 internalises glycosylated ligands from the extracellular space for release in an endosomal compartment and ...	This cysteine-rich domain is found at the N-terminal end of human C-type mannose receptor 2 (MRC2) and similar proteins from vertebrates. MRC2 internalises glycosylated ligands from the extracellular space for release in an endosomal compartment and may play a role as endocytotic lectin receptor. It may also be involved in cancer progression as well as in other chronic tissue destructive diseases acting on collagen turnover. This domain is organised into two regions: the N-terminal folds into two lobes similarly to the canonical beta-trefoil structure. The predicted third lobe folds into an alpha-helix followed by a long flexible loop and a beta-strand [1-6].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Macrophage mannose receptor 1	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding protein binding virus receptor activity exogenous protein binding molecular transducer activity signaling receptor activity cargo receptor activity transmembrane signaling receptor activity	biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response response to type II interferon response to cytokine defense response to symbiont response to external stimulus cellular response to type II interferon response to biotic stimulus response to peptide response to chemical immune system process defense response to other organism biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response response to type II interferon response to cytokine defense response to symbiont response to external stimulus cellular response to type II interferon response to biotic stimulus response to peptide response to chemical immune system process defense response to other organism response to stress innate immune response cellular response to cytokine stimulus response to external biotic stimulus response to interleukin-4 cellular response to interleukin-4 cellular response to stimulus response to lipid cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to biotic stimulus cellular response to chemical stimulus response to bacterium cellular response to lipid cellular process response to molecule of bacterial origin localization import into cell transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport	cell surface cellular anatomical structure endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cell surface cellular anatomical structure endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013806	Kringle-like fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036943	Fibronectin type II domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001304	C-type lectin-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018378	C-type lectin, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR035992	Ricin B-like lectins	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050111	C-type lectin and snaclec domain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000562	Fibronectin type II domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000772	Ricin B, lectin domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: P22897	allergic contact dermatitis lung carcinoma myopathy non-small cell lung carcinoma pancreatic ductal adenocarcinoma adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia breast carcinoma dermatomyositis ductal breast carcinoma in situ head and neck cancer juvenile dermatomyositis lung adenocarcinoma malignant colon neoplasm nephrosclerosis allergic contact dermatitis lung carcinoma myopathy non-small cell lung carcinoma pancreatic ductal adenocarcinoma adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia breast carcinoma dermatomyositis ductal breast carcinoma in situ head and neck cancer juvenile dermatomyositis lung adenocarcinoma malignant colon neoplasm nephrosclerosis osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Sjogren syndrome breast fibroadenoma diabetes mellitus Emery-Dreifuss muscular dystrophy interstitial cystitis large cell medulloblastoma lung cancer medulloblastoma non-alcoholic fatty liver disease ovarian cancer pancreatic intraductal papillary-mucinous neoplasm Becker muscular dystrophy ulcerative colitis chronic obstructive pulmonary disease Duchenne muscular dystrophy facioscapulohumeral muscular dystrophy invasive ductal breast carcinoma limb-girdle muscular dystrophy

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.