5Y02

C-terminal peptide depleted mutant of hydroxynitrile lyase from Passiflora edulis (PeHNL) bound with (R)-mandelonitrile

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5y02d_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
I	d5y02i_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
J	d5y02j_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
K	d5y02k_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
A	d5y02a_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
B	d5y02b_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
C	d5y02c1	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
C	d5y02c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
E	d5y02e_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
F	d5y02f_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
G	d5y02g_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
H	d5y02h_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
L	d5y02l_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Dabb	e5y02D1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
I	Dabb	e5y02I1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
J	Dabb	e5y02J1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
K	Dabb	e5y02K1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
A	Dabb	e5y02A1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
B	Dabb	e5y02B1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
C	Dabb	e5y02C1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
E	Dabb	e5y02E1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
F	Dabb	e5y02F1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
G	Dabb	e5y02G1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
H	Dabb	e5y02H1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
L	Dabb	e5y02L1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
I	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
J	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
K	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
A	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
C	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
E	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
F	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
G	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
H	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
L	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07876	Stress responsive A/B Barrel Domain (Dabb)	Stress responsive A/B Barrel Domain	The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera ([1]). It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Swiss:Q9ZA13; [2]) ...	The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera ([1]). It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Swiss:Q9ZA13; [2]). Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved (Swiss:Q9LUV2) and the domain forms an a/b barrel dimer ([3]). Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Hydroxynitrile lyase	lyase activity catalytic activity	developmental process multi-multicellular organism process multicellular organismal process pollination reproductive process biological process involved in intraspecies interaction between organisms developmental process involved in reproduction pollen tube adhesion cell communication cell adhesion pollen-pistil interaction cell-cell adhesion anatomical structure development cellular process developmental process multi-multicellular organism process multicellular organismal process pollination reproductive process biological process involved in intraspecies interaction between organisms developmental process involved in reproduction pollen tube adhesion cell communication cell adhesion pollen-pistil interaction cell-cell adhesion anatomical structure development cellular process pollen tube development	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013097	Stress responsive alpha-beta barrel	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011008	Dimeric alpha-beta barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR044662	Stress-response A/B barrel domain-containing protein HS1/DABB1-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.