5ZQV | pdb_00005zqv

Crystal Structure of Protein Phosphate 1 complexed with PP1 binding domain of GM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5zqvd_	Alpha and beta proteins (a+b)	Metallo-dependent phosphatases	Metallo-dependent phosphatases	Protein serine/threonine phosphatase	Protein phosphatase-1 (PP-1)	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d5zqvc_	Alpha and beta proteins (a+b)	Metallo-dependent phosphatases	Metallo-dependent phosphatases	Protein serine/threonine phosphatase	Protein phosphatase-1 (PP-1)	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d5zqvb_	Alpha and beta proteins (a+b)	Metallo-dependent phosphatases	Metallo-dependent phosphatases	Protein serine/threonine phosphatase	Protein phosphatase-1 (PP-1)	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d5zqva_	Alpha and beta proteins (a+b)	Metallo-dependent phosphatases	Metallo-dependent phosphatases	Protein serine/threonine phosphatase	Protein phosphatase-1 (PP-1)	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	MS_channel_2nd	e5zqvD1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MS_channel_2nd	ECOD (develop294)
C	MS_channel_2nd	e5zqvC1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MS_channel_2nd	ECOD (develop294)
B	MS_channel_2nd	e5zqvB1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MS_channel_2nd	ECOD (develop294)
A	AAA_11	e5zqvA1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_11	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.60.21.10	Alpha Beta	4-Layer Sandwich	Purple Acid Phosphatase	chain A, domain 2	CATH (4.3.0)
C	3.60.21.10	Alpha Beta	4-Layer Sandwich	Purple Acid Phosphatase	chain A, domain 2	CATH (4.3.0)
B	3.60.21.10	Alpha Beta	4-Layer Sandwich	Purple Acid Phosphatase	chain A, domain 2	CATH (4.3.0)
A	3.60.21.10	Alpha Beta	4-Layer Sandwich	Purple Acid Phosphatase	chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00149	Calcineurin-like phosphoesterase (Metallophos)	Calcineurin-like phosphoesterase	This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ...	This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or yeast MRE11 Swiss:P32829. The most conserved regions in this superfamily centre around the metal chelating residues.	Domain
A, B, C, D	PF16891	Serine-threonine protein phosphatase N-terminal domain (STPPase_N)	Serine-threonine protein phosphatase N-terminal domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	Protein phosphatase 1 regulatory subunit 3A	protein phosphatase binding phosphatase binding protein phosphatase 1 binding protein binding binding enzyme binding polysaccharide binding carbohydrate binding glycogen binding	regulation of glycogen biosynthetic process regulation of cellular process glucan biosynthetic process energy derivation by oxidation of organic compounds regulation of glucan biosynthetic process regulation of generation of precursor metabolites and energy regulation of polysaccharide metabolic process regulation of primary metabolic process polysaccharide metabolic process glucan metabolic process regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process regulation of glycogen biosynthetic process regulation of cellular process glucan biosynthetic process energy derivation by oxidation of organic compounds regulation of glucan biosynthetic process regulation of generation of precursor metabolites and energy regulation of polysaccharide metabolic process regulation of primary metabolic process polysaccharide metabolic process glucan metabolic process regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process polysaccharide biosynthetic process carbohydrate biosynthetic process glycogen metabolic process biological regulation primary metabolic process generation of precursor metabolites and energy regulation of macromolecule metabolic process glycogen biosynthetic process macromolecule biosynthetic process biosynthetic process regulation of polysaccharide biosynthetic process metabolic process cellular process energy reserve metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of carbohydrate biosynthetic process regulation of glycogen metabolic process regulation of metabolic process	cellular anatomical structure membrane phosphatase complex protein-containing complex protein phosphatase type 1 complex intracellular anatomical structure catalytic complex cytoplasm protein serine/threonine phosphatase complex
A, B, C, D	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity cell adhesion molecule binding cadherin binding involved in cell-cell adhesion cadherin binding protein binding binding cell adhesion mediator activity phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity cell adhesion molecule binding cadherin binding involved in cell-cell adhesion cadherin binding protein binding binding cell adhesion mediator activity cell-cell adhesion mediator activity protein phosphatase binding phosphatase binding protein phosphatase 1 binding enzyme binding protein-containing complex binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding RNA polymerase II CTD heptapeptide repeat modifying activity RNA polymerase II CTD heptapeptide repeat phosphatase activity RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity ribonucleoprotein complex binding	cellular response to stimulus telomere maintenance in response to DNA damage response to stimulus telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization cellular response to stress DNA damage response response to stress cellular response to stimulus telomere maintenance in response to DNA damage response to stimulus telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization cellular response to stress DNA damage response response to stress cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process regulation of protein stability biological regulation regulation of biological quality protein stabilization developmental process multicellular organismal process epithelium development tube development branching morphogenesis of an epithelial tube morphogenesis of an epithelium tissue development tissue morphogenesis anatomical structure morphogenesis multicellular organism development tube morphogenesis morphogenesis of a branching structure anatomical structure development epithelial tube morphogenesis morphogenesis of a branching epithelium cell division positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signal transduction in absence of ligand signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of extrinsic apoptotic signaling pathway in absence of ligand extrinsic apoptotic signaling pathway cell communication positive regulation of apoptotic signaling pathway positive regulation of response to stimulus extrinsic apoptotic signaling pathway in absence of ligand signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death cell surface receptor signaling pathway regulation of apoptotic process positive regulation of extrinsic apoptotic signaling pathway cell death positive regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway positive regulation of signaling protein dephosphorylation dephosphorylation macromolecule modification phosphate-containing compound metabolic process protein metabolic process protein modification process phosphorus metabolic process transcription elongation by RNA polymerase II negative regulation of biological process RNA metabolic process negative regulation of transcription elongation by RNA polymerase II regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of DNA-templated transcription elongation negative regulation of DNA-templated transcription regulation of transcription elongation by RNA polymerase II negative regulation of metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process negative regulation of DNA-templated transcription, elongation regulation of gene expression DNA-templated transcription elongation biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process regulation of protein metabolic process translation protein biosynthetic process post-transcriptional regulation of gene expression regulation of translation neutral lipid metabolic process negative regulation of triglyceride metabolic process catabolic process regulation of triglyceride metabolic process regulation of lipid metabolic process glycerolipid catabolic process triglyceride catabolic process triglyceride metabolic process negative regulation of lipid catabolic process negative regulation of catabolic process lipid catabolic process neutral lipid catabolic process negative regulation of triglyceride catabolic process acylglycerol catabolic process regulation of catabolic process regulation of lipid catabolic process glycerolipid metabolic process acylglycerol metabolic process regulation of triglyceride catabolic process negative regulation of lipid metabolic process lipid metabolic process rhythmic process circadian regulation of gene expression circadian rhythm response to light stimulus entrainment of circadian clock response to external stimulus regulation of circadian rhythm photoperiodism response to radiation response to abiotic stimulus entrainment of circadian clock by photoperiod promoter clearance during DNA-templated transcription RNA polymerase II promoter clearance double-strand break repair double-strand break repair via nonhomologous end joining double-strand break repair via alternative nonhomologous end joining DNA repair regulation of glycogen biosynthetic process glucan biosynthetic process energy derivation by oxidation of organic compounds regulation of glucan biosynthetic process regulation of generation of precursor metabolites and energy regulation of polysaccharide metabolic process polysaccharide metabolic process glucan metabolic process regulation of carbohydrate metabolic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process glycogen metabolic process generation of precursor metabolites and energy glycogen biosynthetic process regulation of polysaccharide biosynthetic process energy reserve metabolic process regulation of carbohydrate biosynthetic process regulation of glycogen metabolic process positive regulation of macromolecule biosynthetic process positive regulation of glycogen metabolic process positive regulation of metabolic process regulation of small molecule metabolic process small molecule metabolic process positive regulation of macromolecule metabolic process hexose metabolic process positive regulation of glucose metabolic process positive regulation of glycogen biosynthetic process positive regulation of carbohydrate metabolic process monosaccharide metabolic process positive regulation of biosynthetic process regulation of glucose metabolic process positive regulation of small molecule metabolic process glucose metabolic process animal organ development respiratory tube development lung development respiratory system development system development carbohydrate catabolic process macromolecule catabolic process regulation of glycogen catabolic process glycogen catabolic process regulation of carbohydrate catabolic process glucan catabolic process polysaccharide catabolic process protein-containing complex disassembly regulation of protein-containing complex disassembly regulation of termination of RNA polymerase II transcription, poly(A)-coupled cellular component disassembly termination of RNA polymerase II transcription, poly(A)-coupled positive regulation of RNA metabolic process regulation of termination of DNA-templated transcription termination of RNA polymerase II transcription regulation of termination of RNA polymerase II transcription regulation of cellular component organization positive regulation of cellular component organization positive regulation of DNA-templated transcription DNA-templated transcription termination positive regulation of termination of DNA-templated transcription positive regulation of termination of RNA polymerase II transcription positive regulation of protein-containing complex disassembly protein-containing complex organization positive regulation of RNA biosynthetic process positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled response to metal ion response to chemical response to lead ion positive regulation of transcription elongation by RNA polymerase II positive regulation of DNA-templated transcription, elongation regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II	somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body phosphatase complex protein-containing complex protein phosphatase type 1 complex intracellular anatomical structure catalytic complex cytoplasm protein serine/threonine phosphatase complex PTW/PP1 phosphatase complex cytosol somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body phosphatase complex protein-containing complex protein phosphatase type 1 complex intracellular anatomical structure catalytic complex cytoplasm protein serine/threonine phosphatase complex PTW/PP1 phosphatase complex cytosol synapse cell junction glutamatergic synapse cell-cell junction adherens junction anchoring junction glycogen granule neuron spine neuron projection dendritic spine plasma membrane bounded cell projection cell projection postsynapse dendrite dendritic tree intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen nuclear lumen cell periphery plasma membrane membrane presynapse nucleoplasm lipid droplet

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR005036	CBM21 (carbohydrate binding type-21) domain	Domain
E, F, G, H	IPR050782	Protein phosphatase 1 regulatory subunit 3	Family
E, F, G, H	IPR038175	CBM21 domain superfamily	Homologous Superfamily
A, B, C, D	IPR050341	Serine/threonine-protein phosphatase PP1 catalytic subunit	Family
A, B, C, D	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
A, B, C, D	IPR004843	Calcineurin-like, phosphoesterase domain	Domain
A, B, C, D	IPR031675	Serine-threonine protein phosphatase, N-terminal	Domain
A, B, C, D	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E, F, G, H	Pharos: Q16821	type 2 diabetes mellitus familial partial lipodystrophy acquired metabolic disease Becker muscular dystrophy DIABETES MELLITUS, TYPE 2, PROTECTION AGAINST amyotrophic lateral sclerosis diabetes mellitus Duchenne muscular dystrophy maturity-onset diabetes of the young attention deficit hyperactivity disorder, inattentive type Emery-Dreifuss muscular dystrophy limb-girdle muscular dystrophy myopathy

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.