6BXM
Crystal structure of Candidatus Methanoperedens nitroreducens Dph2 with 4Fe-4S cluster and SAM/cleaved SAM
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Diphthamide_syn_3rd | e6bxmA3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_3rd | ECOD (1.6) |
A | Diphthamide_syn_2nd | e6bxmA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_2nd | ECOD (1.6) |
A | Diphthamide_syn_1st | e6bxmA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_1st | ECOD (1.6) |
B | Diphthamide_syn_3rd | e6bxmB3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_3rd | ECOD (1.6) |
B | Diphthamide_syn_2nd | e6bxmB2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_2nd | ECOD (1.6) |
B | Diphthamide_syn_1st | e6bxmB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Iron-sulphur enzyme Dph2 | F: Diphthamide_syn_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01866 | Putative diphthamide synthesis protein (Diphthamide_syn) | Putative diphthamide synthesis protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Diphthamide biosynthesis enzyme Dph2 |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042265 | Diphthamide synthesis DPH1/DPH2, domain 3 | Homologous Superfamily | |
IPR022428 | Diphthamide synthesis Dph2, archaea | Family | |
IPR042263 | Diphthamide synthesis DPH1/DPH2, domain 1 | Homologous Superfamily | |
IPR042264 | Diphthamide synthesis DPH1/DPH2, domain 2 | Homologous Superfamily | |
IPR016435 | Diphthamide synthesis DPH1/DPH2 | Family | |
IPR035435 | Diphthamide synthesis DHP1/DPH2, eukaryotes and archaea | Family |