6D0O | pdb_00006d0o

rdpA dioxygenase holoenzyme

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6d0oa1	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	automated matches	automated matches	Sphingomonas herbicidovorans (Sphingobium herbicidovorans NBRC 16415 ) [TaxId: 1219045 ],	SCOPe (2.08)
A	d6d0oa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Sphingomonas herbicidovorans (Sphingobium herbicidovorans NBRC 16415 ) [TaxId: 1219045 ],	SCOPe (2.08)
B	d6d0ob1	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	automated matches	automated matches	Sphingomonas herbicidovorans (Sphingobium herbicidovorans NBRC 16415 ) [TaxId: 1219045 ],	SCOPe (2.08)
B	d6d0ob2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Sphingomonas herbicidovorans (Sphingobium herbicidovorans NBRC 16415 ) [TaxId: 1219045 ],	SCOPe (2.08)
D	d6d0od1	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	automated matches	automated matches	Sphingomonas herbicidovorans (Sphingobium herbicidovorans NBRC 16415 ) [TaxId: 1219045 ],	SCOPe (2.08)
D	d6d0od2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Sphingomonas herbicidovorans (Sphingobium herbicidovorans NBRC 16415 ) [TaxId: 1219045 ],	SCOPe (2.08)
C	d6d0oc1	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	automated matches	automated matches	Sphingomonas herbicidovorans (Sphingobium herbicidovorans NBRC 16415 ) [TaxId: 1219045 ],	SCOPe (2.08)
C	d6d0oc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Sphingomonas herbicidovorans (Sphingobium herbicidovorans NBRC 16415 ) [TaxId: 1219045 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Clavaminate synthase-like	8080572	3001848	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Clavaminate synthase-like	8080572	3001848	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Clavaminate synthase-like	8080572	3001848	SCOP2B (2022-06-29)
C	SCOP2 Family	TauD/TfdA-like	8080571	4002161	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Clavaminate synthase-like	8080572	3001848	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e6d0oA1	A: L-aspartase middle domain-like	X: gp11/gp12 receptor-binding domain	H: gp11/gp12 receptor-binding domain	T: Cel124_C	F:	ECOD (20:10:01)
B		e6d0oB1	A: L-aspartase middle domain-like	X: gp11/gp12 receptor-binding domain	H: gp11/gp12 receptor-binding domain	T: OB_NTP_bind	F:	ECOD (20:10:01)
D		e6d0oD1	A: L-aspartase middle domain-like	X: gp11/gp12 receptor-binding domain	H: gp11/gp12 receptor-binding domain	T: OB_NTP_bind	F:	ECOD (20:10:01)
C		e6d0oC1	A: L-aspartase middle domain-like	X: gp11/gp12 receptor-binding domain	H: gp11/gp12 receptor-binding domain	T: OB_NTP_bind	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.60.130.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Clavaminate synthase-like	CATH (4.3.0)
B	3.60.130.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Clavaminate synthase-like	CATH (4.3.0)
D	3.60.130.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Clavaminate synthase-like	CATH (4.3.0)
C	3.60.130.10	Alpha Beta	4-Layer Sandwich	Double-stranded beta-helix	Clavaminate synthase-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase	oxidoreductase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 2-oxoglutarate-dependent dioxygenase activity catalytic activity dioxygenase activity cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003819	TauD/TfdA-like domain	Domain
A, B, C, D	IPR051323	Alpha-ketoglutarate-dependent sulfate ester dioxygenase-like	Family
A, B, C, D	IPR042098	Glutarate 2-hydroxylase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.