6DO4 | pdb_00006do4

KLHDC2 ubiquitin ligase in complex with SelS C-end degron

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e6do4B1	A: PriB N-terminal domain-like	X: Rubredoxin-related	H: Aconitase iron-sulfur domain	T: Oxidored_q2	F:	ECOD (20:10:01)
A		e6do4A1	A: PriB N-terminal domain-like	X: Rubredoxin-related	H: Aconitase iron-sulfur domain	T: Oxidored_q2	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF24681	KLHDC2/KLHL20/DRC7 Kelch-repeats domain (Kelch_KLHDC2_KLHL20_DRC7)	KLHDC2/KLHL20/DRC7 Kelch-repeats domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth D], D [auth C]	SELS C-END DEGRON	molecular transducer activity signaling receptor activity antioxidant activity ubiquitin-specific protease binding protein binding binding enzyme binding protease binding ATPase binding	regulation of cellular process leukocyte apoptotic process negative regulation of biological process regulation of programmed cell death macrophage apoptotic process negative regulation of leukocyte apoptotic process negative regulation of cellular process myeloid cell apoptotic process regulation of leukocyte apoptotic process regulation of biological process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of macrophage apoptotic process regulation of cellular process leukocyte apoptotic process negative regulation of biological process regulation of programmed cell death macrophage apoptotic process negative regulation of leukocyte apoptotic process negative regulation of cellular process myeloid cell apoptotic process regulation of leukocyte apoptotic process regulation of biological process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of macrophage apoptotic process cell death negative regulation of apoptotic process regulation of macrophage apoptotic process inflammatory cell apoptotic process cellular process negative regulation of myeloid cell apoptotic process apoptotic process regulation of myeloid cell apoptotic process programmed cell death monosaccharide metabolic process gluconeogenesis regulation of primary metabolic process regulation of small molecule metabolic process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process regulation of biosynthetic process carbohydrate metabolic process small molecule biosynthetic process carbohydrate biosynthetic process hexose metabolic process primary metabolic process monosaccharide biosynthetic process hexose biosynthetic process biosynthetic process regulation of gluconeogenesis metabolic process regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process multicellular organismal process regulation of tumor necrosis factor production negative regulation of tumor necrosis factor production cytokine production regulation of cytokine production regulation of multicellular organismal process negative regulation of macromolecule metabolic process negative regulation of metabolic process tumor necrosis factor superfamily cytokine production negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression negative regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of tumor necrosis factor superfamily cytokine production regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of multicellular organismal process localization establishment of protein localization establishment of localization cellular response to stimulus catabolic process response to stimulus proteasomal protein catabolic process protein catabolic process macromolecule catabolic process ERAD pathway cellular response to stress response to chemical response to stress protein metabolic process response to endoplasmic reticulum stress interleukin-6 production regulation of interleukin-6 production negative regulation of interleukin-6 production response to redox state signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of response to endoplasmic reticulum stress negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway regulation of signal transduction intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress regulation of intrinsic apoptotic signaling pathway intracellular signal transduction negative regulation of cell communication cell communication regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway regulation of intracellular signal transduction regulation of response to stress negative regulation of apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway negative regulation of response to endoplasmic reticulum stress regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response defense response response to external stimulus regulation of inflammatory response negative regulation of response to external stimulus negative regulation of defense response inflammatory response biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin regulation of acute inflammatory response to antigenic stimulus negative regulation of acute inflammatory response inflammatory response to antigenic stimulus negative regulation of acute inflammatory response to antigenic stimulus regulation of immune system process negative regulation of inflammatory response to antigenic stimulus acute inflammatory response immune response negative regulation of immune response regulation of inflammatory response to antigenic stimulus acute inflammatory response to antigenic stimulus negative regulation of immune system process immune system process regulation of immune response regulation of acute inflammatory response response to hexose response to monosaccharide response to carbohydrate response to glucose protein exit from endoplasmic reticulum cellular localization transport establishment of localization in cell intracellular protein localization endoplasmic reticulum to cytosol transport intracellular transport protein transport retrograde protein transport, ER to cytosol macromolecule localization intracellular protein transport response to oxidative stress cellular response to oxidative stress cellular response to chemical stress regulation of glycogen biosynthetic process negative regulation of glycogen biosynthetic process glucan biosynthetic process energy derivation by oxidation of organic compounds regulation of glucan biosynthetic process regulation of generation of precursor metabolites and energy regulation of polysaccharide metabolic process polysaccharide metabolic process glucan metabolic process negative regulation of carbohydrate metabolic process negative regulation of glycogen metabolic process polysaccharide biosynthetic process glycogen metabolic process generation of precursor metabolites and energy glycogen biosynthetic process regulation of polysaccharide biosynthetic process energy reserve metabolic process regulation of glycogen metabolic process cell redox homeostasis cellular homeostasis homeostatic process nitric oxide metabolic process regulation of nitric oxide metabolic process reactive nitrogen species metabolic process regulation of localization import into cell hexose transmembrane transport regulation of D-glucose import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport negative regulation of transport negative regulation of D-glucose import across plasma membrane negative regulation of transmembrane transport hexose import across plasma membrane regulation of transport import across plasma membrane negative regulation of D-glucose transmembrane transport transmembrane transport regulation of transmembrane transport D-glucose import across plasma membrane D-glucose transmembrane transport regulation of D-glucose transmembrane transport monosaccharide transmembrane transport carbohydrate transmembrane transport cellular response to nitrogen compound response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to nitrogen compound cellular response to endogenous stimulus response to hormone response to insulin cellular response to insulin stimulus cellular response to hormone stimulus ER overload response ER-nucleus signaling pathway cellular response to topologically incorrect protein endoplasmic reticulum unfolded protein response cellular response to unfolded protein response to unfolded protein response to topologically incorrect protein	membrane-bounded organelle protein-containing complex intracellular anatomical structure organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle Derlin-1 retrotranslocation complex cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network membrane-bounded organelle protein-containing complex intracellular anatomical structure organelle subcompartment membrane membrane protein complex intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle Derlin-1 retrotranslocation complex cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane Derlin-1-VIMP complex cell periphery plasma membrane low-density lipoprotein particle extracellular region plasma lipoprotein particle extracellular space lipoprotein particle protein-lipid complex polymeric cytoskeletal fiber intracellular membraneless organelle cytoplasmic microtubule cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton very-low-density lipoprotein particle triglyceride-rich plasma lipoprotein particle
A, B	Kelch domain-containing protein 2	ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	catabolic process ubiquitin-dependent protein catabolic process via the C-end degron rule pathway primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process catabolic process ubiquitin-dependent protein catabolic process via the C-end degron rule pathway primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle nuclear lumen nuclear membrane membrane endomembrane system organelle envelope nuclear envelope organelle membrane cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex Cul2-RING ubiquitin ligase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth D], D [auth C]	IPR009703	Selenoprotein S	Family
A, B	IPR015915	Kelch-type beta-propeller	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth D], D [auth C]	Pharos: Q9BQE4	Inflammation prostate cancer non-small cell lung carcinoma ovarian cancer Sjogren syndrome
A, B	Pharos: Q9Y2U9	ovarian cancer plasma cell myeloma pancreatic ductal adenocarcinoma Pick disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.