6E34 | pdb_00006e34

Capsid protein of PCV2 with N,O6-DISULFO-GLUCOSAMINE and 2-O-sulfo-alpha-L-idopyranuronic acid


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
JA [auth Aa]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
Y [auth AP]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
ZA [auth Aq]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
Z [auth AQ]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
YA [auth Ap]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
XA [auth Ao]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
X [auth AO]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
WA [auth An]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
W [auth AN]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
VA [auth Am]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
V [auth AM]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
UA [auth Al]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
U [auth AL]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
TA [auth Ak]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
T [auth AK]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
SA [auth Aj]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
S [auth AJ]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
RA [auth Ai]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
R [auth AI]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
QA [auth Ah]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
Q [auth AH]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
PA [auth Ag]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
P [auth AG]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
OA [auth Af]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
O [auth AF]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
NA [auth Ae]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
N [auth AE]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
MA [auth Ad]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
M [auth AD]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
LA [auth Ac]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
L [auth AC]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
KA [auth Ab]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
K [auth AB]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
J [auth AA]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
IA [auth AZ]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
I [auth A9]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
HB [auth Ay]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
HA [auth AY]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
H [auth A8]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
GB [auth Ax]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
GA [auth AX]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
G [auth A7]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
FB [auth Aw]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
FA [auth AW]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
F [auth A6]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
EB [auth Av]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
EA [auth AV]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
E [auth A5]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
DB [auth Au]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
DA [auth AU]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
D [auth A4]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
CB [auth At]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
CA [auth AT]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
C [auth A3]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
BB [auth As]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
BA [auth AS]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
B [auth A2]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
AB [auth Ar]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
AA [auth AR]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)
A [auth A1]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8091684 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
JA [auth Aa]Oxidored_q2e6e34Aa1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
Y [auth AP]Oxidored_q2e6e34AP1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
ZA [auth Aq]Oxidored_q2e6e34Aq1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
Z [auth AQ]Oxidored_q2e6e34AQ1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
YA [auth Ap]Oxidored_q2e6e34Ap1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
XA [auth Ao]Oxidored_q2e6e34Ao1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
X [auth AO]Oxidored_q2e6e34AO1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
WA [auth An]Oxidored_q2e6e34An1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
W [auth AN]Oxidored_q2e6e34AN1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
VA [auth Am]Oxidored_q2e6e34Am1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
V [auth AM]Oxidored_q2e6e34AM1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
UA [auth Al]Oxidored_q2e6e34Al1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
U [auth AL]Oxidored_q2e6e34AL1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
TA [auth Ak]Oxidored_q2e6e34Ak1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
T [auth AK]Oxidored_q2e6e34AK1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
SA [auth Aj]Oxidored_q2e6e34Aj1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
S [auth AJ]Oxidored_q2e6e34AJ1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
RA [auth Ai]Oxidored_q2e6e34Ai1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
R [auth AI]Oxidored_q2e6e34AI1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
QA [auth Ah]Oxidored_q2e6e34Ah1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
Q [auth AH]Oxidored_q2e6e34AH1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
PA [auth Ag]Oxidored_q2e6e34Ag1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
P [auth AG]Oxidored_q2e6e34AG1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
OA [auth Af]Oxidored_q2e6e34Af1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
O [auth AF]Oxidored_q2e6e34AF1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
NA [auth Ae]Oxidored_q2e6e34Ae1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
N [auth AE]Oxidored_q2e6e34AE1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
MA [auth Ad]Oxidored_q2e6e34Ad1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
M [auth AD]Oxidored_q2e6e34AD1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
LA [auth Ac]Oxidored_q2e6e34Ac1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
L [auth AC]Oxidored_q2e6e34AC1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
KA [auth Ab]Oxidored_q2e6e34Ab1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
K [auth AB]Oxidored_q2e6e34AB1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
J [auth AA]Oxidored_q2e6e34AA1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
IA [auth AZ]Oxidored_q2e6e34AZ1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
I [auth A9]Oxidored_q2e6e34A91 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
HB [auth Ay]Oxidored_q2e6e34Ay1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
HA [auth AY]Oxidored_q2e6e34AY1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
H [auth A8]Oxidored_q2e6e34A81 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
GB [auth Ax]Oxidored_q2e6e34Ax1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
GA [auth AX]Oxidored_q2e6e34AX1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
G [auth A7]Oxidored_q2e6e34A71 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
FB [auth Aw]Oxidored_q2e6e34Aw1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
FA [auth AW]Oxidored_q2e6e34AW1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
F [auth A6]Oxidored_q2e6e34A61 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
EB [auth Av]Oxidored_q2e6e34Av1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
EA [auth AV]Oxidored_q2e6e34AV1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
E [auth A5]Oxidored_q2e6e34A51 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
DB [auth Au]Oxidored_q2e6e34Au1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
DA [auth AU]Oxidored_q2e6e34AU1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
D [auth A4]Oxidored_q2e6e34A41 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
CB [auth At]Oxidored_q2e6e34At1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
CA [auth AT]Oxidored_q2e6e34AT1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
C [auth A3]Oxidored_q2e6e34A31 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
BB [auth As]Oxidored_q2e6e34As1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
BA [auth AS]Oxidored_q2e6e34AS1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
B [auth A2]Oxidored_q2e6e34A21 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
AB [auth Ar]Oxidored_q2e6e34Ar1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
AA [auth AR]Oxidored_q2e6e34AR1 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)
A [auth A1]Oxidored_q2e6e34A11 A: alpha bundlesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Oxidored_q2ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein of PCV2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR038652Circovirus capsid superfamilyHomologous Superfamily
IPR003383Circovirus capsid proteinFamily