6FEC | pdb_00006fec

Human cap-dependent 48S pre-initiation complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth 3]SCOP2B SuperfamilyTPR-like 8091483 3001345 SCOP2B (2022-06-29)
C [auth 3]SCOP2B SuperfamilyWinged helix DNA-binding domain 8091486 3000034 SCOP2B (2022-06-29)
F [auth 6]SCOP2B SuperfamilyWinged helix DNA-binding domain 8002864 3000034 SCOP2B (2022-06-29)
F [auth 6]SCOP2B SuperfamilyARM repeat-like 8002866 3000116 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyNucleic acid-binding proteins 8052717 3000135 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052715 3002138 SCOP2B (2022-06-29)
M [auth H]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082685 3000100 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052755 3001473 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyNucleic acid-binding proteins 8052756 3000135 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052757 3000334 SCOP2B (2022-06-29)
Q [auth L]SCOP2B SuperfamilyS13-like H2TH domain 8101555 3000053 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilyRibosomal protein S30e-like 8053453 3002190 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052959 3001284 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyHomeodomain-like 8052958 3000001 SCOP2B (2022-06-29)
CA [auth a]SCOP2B SuperfamilyRibosomal protein S8 8095469 3000709 SCOP2B (2022-06-29)
HA [auth f]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8052791 3001397 SCOP2B (2022-06-29)
KA [auth i]SCOP2B SuperfamilyRibosomal S3Ae-like 8053212 3002166 SCOP2B (2022-06-29)
LA [auth j]SCOP2B SuperfamilyTranslational machinery components 8098844 3000571 SCOP2B (2022-06-29)
QA [auth o]SCOP2B Superfamily50S Ribosomal protein L14-like 8053077 3000433 SCOP2B (2022-06-29)
SA [auth q]SCOP2B SuperfamilyGS N-terminal domain-like 8053171 3000408 SCOP2B (2022-06-29)
VA [auth t]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055714 3000034 SCOP2B (2022-06-29)
WA [auth u]SCOP2B SuperfamilyRNA-binding domain, RBD 8043568 3000110 SCOP2B (2022-06-29)
TA [auth r]SCOP2B SuperfamilyL30e-like 8063978 3001739 SCOP2B (2022-06-29)
NA [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8063426 3000135 SCOP2B (2022-06-29)
JA [auth h]SCOP2B SuperfamilyRibosomal protein S10 8098806 3001336 SCOP2B (2022-06-29)
IA [auth g]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II) 8043545 3001043 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090992 3000034 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal protein S7 8066003 3000799 SCOP2B (2022-06-29)
O [auth J]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052572 3000068 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth 3]V-sete6fec31 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (develop294)
D [auth 4]Cadherine6fec41 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
E [auth 5]Cadherine6fec51 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
F [auth 6]Cadherine6fec61 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
L [auth G]Cadherine6fecG1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
M [auth H]Cadherine6fecH1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
N [auth I]Cadherine6fecI1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
P [auth K]Cadherine6fecK1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
Q [auth L]Cadherine6fecL1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
T [auth Q]Cadherine6fecQ1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
U [auth R]Cadherine6fecR1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
X [auth V]Cadherine6fecV1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
BA [auth Z]Cadherine6fecZ1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
CA [auth a]Cadherine6feca1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
DA [auth b]Cadherine6fecb1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
EA [auth c]Cadherine6fecc1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
GA [auth e]Cadherine6fece1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
HA [auth f]Cadherine6fecf1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
KA [auth i]Cadherine6feci1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
LA [auth j]Cadherine6fecj1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
PA [auth n]Cadherine6fecn1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
QA [auth o]Cadherine6feco1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
SA [auth q]Cadherine6fecq1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
VA [auth t]Cadherine6fect1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
I [auth 9]Cadherine6fec91 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
WA [auth u]Cadherine6fecu1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
UA [auth s]Cadherine6fecs1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
TA [auth r]Cadherine6fecr1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
RA [auth p]Cadherine6fecp1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
OA [auth m]Cadherine6fecm1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
NA [auth l]Cadherine6fecl1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
MA [auth k]Cadherine6feck1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
JA [auth h]Cadherine6fech1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
IA [auth g]Cadherine6fecg1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
AA [auth Y]Cadherine6fecY1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
Z [auth X]Cadherine6fecX1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
Y [auth W]Cadherine6fecW1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
W [auth U]Cadherine6fecU1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
V [auth S]Cadherine6fecS1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
S [auth P]Cadherine6fecP1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)
O [auth J]Cadherine6fecJ1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CadherinECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth 3]PF09440eIF3 subunit 6 N terminal domain (eIF3_N)eIF3 subunit 6 N terminal domainThis is the N terminal domain of subunit 6 translation initiation factor eIF3. Domain
C [auth 3]PF21357Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)Eukaryotic translation initiation factor 3 subunit E, C-terminalEukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1]. Domain
C [auth 3]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
F [auth 6]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
H [auth 8]PF18005eIF3 subunit M, C-terminal helix (eIF3m_C_helix)eIF3 subunit M, C-terminal helixThis is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1]. Domain
H [auth 8]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
K [auth F]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
L [auth G]PF07650KH domain (KH_2)KH domainDomain
L [auth G]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
L [auth G]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
L [auth G]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
M [auth H]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
M [auth H]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
N [auth I]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
N [auth I]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
N [auth I]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
N [auth I]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
N [auth I]PF00467KOW motif (KOW)KOW motif- Family
P [auth K]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
P [auth K]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
Q [auth L]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
Q [auth L]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28eDomain
T [auth Q]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
T [auth Q]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
U [auth R]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
X [auth V]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
BA [auth Z]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. Domain
BA [auth Z]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
AA [auth Y]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
Z [auth X]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
Y [auth W]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
W [auth U]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
V [auth S]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
V [auth S]PF09173Initiation factor eIF2 gamma, C terminal (eIF2_C)Initiation factor eIF2 gamma, C terminalMembers of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1]. Domain
V [auth S]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
S [auth P]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
R [auth N]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
O [auth J]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O [auth J]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
J [auth A]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]Eukaryotic translation initiation factor 3 subunit A---
C [auth 3]Eukaryotic translation initiation factor 3 subunit E
D [auth 4]Eukaryotic translation initiation factor 3 subunit F---
E [auth 5]Eukaryotic translation initiation factor 3 subunit H---
F [auth 6]Eukaryotic translation initiation factor 3 subunit K
H [auth 8]Eukaryotic translation initiation factor 3 subunit M
K [auth F]Messenger RNA (26-MER)---
L [auth G]40S ribosomal protein S11
M [auth H]40S ribosomal protein S16
N [auth I]40S ribosomal protein S4, X isoform
P [auth K]40S ribosomal protein S9
Q [auth L]40S ribosomal protein S18
T [auth Q]40S ribosomal protein S23
U [auth R]40S ribosomal protein S19---
X [auth V]40S ribosomal protein S30
BA [auth Z]40S ribosomal protein S13
CA [auth a]40S ribosomal protein S15a
DA [auth b]40S ribosomal protein S21---
EA [auth c]40S ribosomal protein S2---
FA [auth d]EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT (eIF2-Beta)---
GA [auth e]40S ribosomal protein S17
HA [auth f]40S ribosomal protein SA
KA [auth i]40S ribosomal protein S3a
LA [auth j]40S ribosomal protein S14
PA [auth n]40S ribosomal protein S15
QA [auth o]40S ribosomal protein S8
SA [auth q]40S ribosomal protein S6
VA [auth t]40S ribosomal protein S10
XA [auth w]Eukaryotic translation initiation factor 3 subunit B---
I [auth 9]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D---
G [auth 7]Eukaryotic translation initiation factor 3 subunit L
WA [auth u]Eukaryotic translation initiation factor 4B
UA [auth s]40S ribosomal protein S24
TA [auth r]40S ribosomal protein S12
RA [auth p]Ubiquitin-40S ribosomal protein S27a
OA [auth m]Receptor of activated protein C kinase 1
NA [auth l]40S ribosomal protein S28
MA [auth k]40S ribosomal protein S26---
JA [auth h]40S ribosomal protein S20
IA [auth g]40S ribosomal protein S3
AA [auth Y]40S ribosomal protein S27
Z [auth X]40S ribosomal protein S7
Y [auth W]40S ribosomal protein S25
W [auth U]40S ribosomal protein S5
V [auth S]Eukaryotic translation initiation factor 2 subunit 3
B [auth 2]Eukaryotic translation initiation factor 3 subunit C---
S [auth P]Eukaryotic translation initiation factor 2 subunit 1---
R [auth N]Transfer RNA (75-MER)---
O [auth J]40S ribosomal protein S29
J [auth A]18S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth 3]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
C [auth 3]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
C [auth 3]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
C [auth 3]IPR000717Proteasome component (PCI) domainDomain
F [auth 6]IPR016024Armadillo-type foldHomologous Superfamily
F [auth 6]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
F [auth 6]IPR033464CSN8/PSMD8/EIF3KDomain
F [auth 6]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
F [auth 6]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
F [auth 6]IPR000717Proteasome component (PCI) domainDomain
F [auth 6]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily
H [auth 8]IPR016024Armadillo-type foldHomologous Superfamily
H [auth 8]IPR040750eIF3 subunit M, C-terminal helix domainDomain
H [auth 8]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth 8]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily
H [auth 8]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
H [auth 8]IPR000717Proteasome component (PCI) domainDomain
L [auth G]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth G]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
L [auth G]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth G]IPR000266Small ribosomal subunit protein uS17Family
L [auth G]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
M [auth H]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
M [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
M [auth H]IPR000754Small ribosomal subunit protein uS9Family
M [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
N [auth I]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
N [auth I]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
N [auth I]IPR013845Small ribosomal subunit protein eS4, central regionDomain
N [auth I]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth I]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
N [auth I]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
N [auth I]IPR002942RNA-binding S4 domainDomain
N [auth I]IPR000876Small ribosomal subunit protein eS4Family
N [auth I]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
N [auth I]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
N [auth I]IPR005824KOWDomain
P [auth K]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
P [auth K]IPR002942RNA-binding S4 domainDomain
P [auth K]IPR022801Small ribosomal subunit protein uS4Family
P [auth K]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
P [auth K]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
P [auth K]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
Q [auth L]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
Q [auth L]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
Q [auth L]IPR001892Small ribosomal subunit protein uS13Family
Q [auth L]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
T [auth Q]IPR006032Small ribosomal subunit protein uS12Family
T [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth Q]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
X [auth V]IPR019954Ubiquitin conserved siteConserved Site
X [auth V]IPR006846Small ribosomal subunit protein eS30Family
X [auth V]IPR039415Ubiquitin-like protein FUBIDomain
X [auth V]IPR000626Ubiquitin-like domainDomain
X [auth V]IPR019956Ubiquitin domainDomain
X [auth V]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
BA [auth Z]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
BA [auth Z]IPR000589Small ribosomal subunit protein uS15Family
BA [auth Z]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
BA [auth Z]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
CA [auth a]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
CA [auth a]IPR000630Small ribosomal subunit protein uS8Family
CA [auth a]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
GA [auth e]IPR001210Small ribosomal subunit protein eS17Family
GA [auth e]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
GA [auth e]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
HA [auth f]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
HA [auth f]IPR001865Small ribosomal subunit protein uS2Family
HA [auth f]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
HA [auth f]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
HA [auth f]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
HA [auth f]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
HA [auth f]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
KA [auth i]IPR001593Small ribosomal subunit protein eS1Family
KA [auth i]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
KA [auth i]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
LA [auth j]IPR001971Small ribosomal subunit protein uS11Family
LA [auth j]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
LA [auth j]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
PA [auth n]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
PA [auth n]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
PA [auth n]IPR002222Small ribosomal subunit protein uS19Family
PA [auth n]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
QA [auth o]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
QA [auth o]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
QA [auth o]IPR001047Small ribosomal subunit protein eS8Family
QA [auth o]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
SA [auth q]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
SA [auth q]IPR001377Small ribosomal subunit protein eS6Family
SA [auth q]IPR014401Small ribosomal subunit protein eS6-likeFamily
VA [auth t]IPR037447Small ribosomal subunit protein eS10Family
VA [auth t]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
VA [auth t]IPR005326Plectin/eS10, N-terminalDomain
G [auth 7]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
G [auth 7]IPR000717Proteasome component (PCI) domainDomain
G [auth 7]IPR019382Translation initiation factor 3 complex subunit LFamily
WA [auth u]IPR000504RNA recognition motif domainDomain
WA [auth u]IPR033107Eukaryotic translation initiation factor 4B, RNA recognition motifDomain
WA [auth u]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
WA [auth u]IPR035979RNA-binding domain superfamilyHomologous Superfamily
UA [auth s]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
UA [auth s]IPR001976Small ribosomal subunit protein eS24Family
UA [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
UA [auth s]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
TA [auth r]IPR000530Small ribosomal subunit protein eS12Family
TA [auth r]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
TA [auth r]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
TA [auth r]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
RA [auth p]IPR019954Ubiquitin conserved siteConserved Site
RA [auth p]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
RA [auth p]IPR050158Ubiquitin and ubiquitin-likeFamily
RA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth p]IPR000626Ubiquitin-like domainDomain
RA [auth p]IPR002906Small ribosomal subunit protein eS31Domain
RA [auth p]IPR019956Ubiquitin domainDomain
RA [auth p]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
OA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
OA [auth m]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
OA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth m]IPR045223Small ribosomal subunit protein RACK1-likeFamily
OA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth m]IPR001680WD40 repeatRepeat
NA [auth l]IPR028626Ribosomal protein eS28 conserved siteConserved Site
NA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
NA [auth l]IPR000289Small ribosomal subunit protein eS28Family
JA [auth h]IPR027486Small ribosomal subunit protein uS10 domainDomain
JA [auth h]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
JA [auth h]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
JA [auth h]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
JA [auth h]IPR001848Small ribosomal subunit protein uS10Family
IA [auth g]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IA [auth g]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IA [auth g]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IA [auth g]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
IA [auth g]IPR004044K Homology domain, type 2Domain
IA [auth g]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IA [auth g]IPR057258Small ribosomal subunit protein uS3Family
IA [auth g]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
AA [auth Y]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
AA [auth Y]IPR000592Small ribosomal subunit protein eS27Family
AA [auth Y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth X]IPR000554Small ribosomal subunit protein eS7Family
Z [auth X]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
Y [auth W]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Y [auth W]IPR004977Small ribosomal subunit protein eS25Family
W [auth U]IPR023798Small ribosomal subunit protein uS7 domainDomain
W [auth U]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
W [auth U]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
W [auth U]IPR000235Small ribosomal subunit protein uS7Family
W [auth U]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
V [auth S]IPR000795Translational (tr)-type GTP-binding domainDomain
V [auth S]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
V [auth S]IPR004161Translation elongation factor EFTu-like, domain 2Domain
V [auth S]IPR050543Eukaryotic Initiation Factor 2 Gamma SubunitFamily
V [auth S]IPR044128Initiation factor eIF2 gamma, GTP-binding domainDomain
V [auth S]IPR015256Initiation factor eIF2 gamma, C-terminalDomain
V [auth S]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
V [auth S]IPR044127Initiation factor eIF2 gamma, domain 2Domain
V [auth S]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
O [auth J]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
O [auth J]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
O [auth J]IPR001209Small ribosomal subunit protein uS14Family
O [auth J]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C [auth 3]PharosP60228
F [auth 6]PharosQ9UBQ5
H [auth 8]PharosQ7L2H7
L [auth G]PharosP62280
M [auth H]PharosP62249
N [auth I]PharosP62701
P [auth K]PharosP46781
Q [auth L]PharosP62269
T [auth Q]PharosP62266
X [auth V]PharosP62861
BA [auth Z]PharosP62277
CA [auth a]PharosP62244
GA [auth e]PharosP08708
HA [auth f]PharosP08865
LA [auth j]PharosP62263
PA [auth n]PharosP62841
QA [auth o]PharosP62241
SA [auth q]PharosP62753
VA [auth t]PharosP46783
WA [auth u]PharosP23588
UA [auth s]PharosP62847
TA [auth r]PharosP25398
RA [auth p]PharosP62979
OA [auth m]PharosP63244
NA [auth l]PharosP62857
JA [auth h]PharosP60866
IA [auth g]PharosP23396
AA [auth Y]PharosP42677
Z [auth X]PharosP62081
Y [auth W]PharosP62851
W [auth U]PharosP46782
V [auth S]PharosP41091
O [auth J]PharosP62273