6KNH
Crystal structure of SbnH in complex with citrate, a PLP-dependent decarboxylase in Staphyloferrin B biothesynthesis
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Orn_DAP_Arg_deC_C | e6knhA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Orn_DAP_Arg_deC_C | ECOD (1.6) |
| A | Orn_DAP_Arg_deC_N | e6knhA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Orn_DAP_Arg_deC_N | ECOD (1.6) |
| B | Orn_DAP_Arg_deC_C | e6knhB2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Orn_DAP_Arg_deC_C | ECOD (1.6) |
| B | Orn_DAP_Arg_deC_N | e6knhB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Orn_DAP_Arg_deC_N | ECOD (1.6) |
| C | Orn_DAP_Arg_deC_C | e6knhC2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Orn_DAP_Arg_deC_C | ECOD (1.6) |
| C | Orn_DAP_Arg_deC_N | e6knhC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Orn_DAP_Arg_deC_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02784 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain (Orn_Arg_deC_N) | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold. | Domain | |
| PF00278 | Pyridoxal-dependent decarboxylase, C-terminal sheet domain (Orn_DAP_Arg_deC) | Pyridoxal-dependent decarboxylase, C-terminal sheet domain | These pyridoxal-dependent decarboxylases act on ornithine, lysine, arginine and related substrates. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Probable diaminopimelate decarboxylase protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR002433 | Ornithine decarboxylase | Family | |
| IPR029066 | PLP-binding barrel | Homologous Superfamily | |
| IPR022643 | Orn/DAP/Arg decarboxylase 2, C-terminal | Domain | |
| IPR009006 | Alanine racemase/group IV decarboxylase, C-terminal | Homologous Superfamily | |
| IPR000183 | Ornithine/DAP/Arg decarboxylase | Family | |
| IPR022644 | Orn/DAP/Arg decarboxylase 2, N-terminal | Domain | |
| IPR022272 | Lipocalin family conserved site | Conserved Site |
