6KQJ | pdb_00006kqj

309 K cryoEM structure of Sso-KARI in complex with Mg2+, NADH and CPD


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
KSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
JSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
ISCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
HSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
GSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
FSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
ESCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
DSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
CSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
BSCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)
ASCOP2B Superfamily6-phosphogluconate dehydrogenase-like 8100428 3000048 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Le6kqjL1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Ke6kqjK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Je6kqjJ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Ie6kqjI1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
He6kqjH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Ge6kqjG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Fe6kqjF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Ee6kqjE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
De6kqjD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Ce6kqjC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Be6kqjB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)
Ae6kqjA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: 7tm_2F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF07991Acetohydroxy acid isomeroreductase, NADPH-binding domain (KARI_N)Acetohydroxy acid isomeroreductase, NADPH-binding domain- Family
A, B, C, D, E
PF01450Ketol-acid reductoisomerase, C-terminal domain (KARI_C)Ketol-acid reductoisomerase, C-terminal domainKetol-acid reductoisomerase (KARI; EC:1.1.1.86), also known as acetohydroxy acid isomeroreductase (AHIR or AHAIR), catalyses the conversion of acetohydroxy acids into dihydroxy valerates in the second step of the biosynthetic pathway for the essent ...Ketol-acid reductoisomerase (KARI; EC:1.1.1.86), also known as acetohydroxy acid isomeroreductase (AHIR or AHAIR), catalyses the conversion of acetohydroxy acids into dihydroxy valerates in the second step of the biosynthetic pathway for the essential branched-chain amino acids valine, leucine, and isoleucine [1, 2, 3, 4, 5, 6]. KARI is present only in bacteria, fungi, and plants, but not in animals. KARIs are divided into two classes on the basis of sequence length and oligomerisation state. Class I KARIs are ~340 amino acid residues in length and include all fungal KARIs, whereas class II KARIs are ~490 residues long and include all plant KARIs. Bacterial KARIs can be either class I or class II. KARIs are composed of two types of domains, an N-terminal Rossmann fold domain and one or two C-terminal knotted domains. Two intertwinned knotted domains are required for function, and in the short-chain or class I KARIs, each polypeptide chain has one knotted domain. As a result, dimerization of two monomers forms two complete KARI active sites. In the long-chain or class II KARIs, a duplication of the knotted domain has occurred and, as a result, the protein does not require dimerisation to complete its active site [1, 2, 3, 4, 5, 6]. The alpha-helical KARI C-terminal knotted domain can be described as a six-helix core in which helices coil like cable threads around each other, thus forming a bundle [1, 2, 3, 4, 5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Ketol-acid reductoisomerase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR013023Ketol-acid reductoisomeraseFamily
A, B, C, D, E
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR000506Ketol-acid reductoisomerase, C-terminalDomain
A, B, C, D, E
IPR013116Ketol-acid reductoisomerase, N-terminalDomain
A, B, C, D, E
IPR0089276-phosphogluconate dehydrogenase-like, C-terminal domain superfamilyHomologous Superfamily